BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1365739	186 (0.980)	25 (0.140)	10/148	NT	12.5%	intergenic (+38/‑416)	rpmG2_1/rpsN2	50S ribosomal protein L33 2/Alternate 30S ribosomal protein S14
*	?	USA300TCH1516_ALE	= 1365764	177 (1.010)	25 (0.140)	10/148	NT	12.5%	intergenic (+63/‑391)	rpmG2_1/rpsN2	50S ribosomal protein L33 2/Alternate 30S ribosomal protein S14

Only 100 of 246 total aligned reads displayed.

ATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTTTATT  >  USA300TCH1516_ALE/1365674‑1365854

     cGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTCTATTGGGGAGCTcgctt                                                                                       <  1:289603‑M2/91‑6 (MQ=255)

     cGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTcgctt                                                                                       <  1:2408397‑M2/91‑6 (MQ=255)

     cGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTcgctt                                                                                       <  1:2798054‑M2/91‑6 (MQ=255)

            tCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATg                                                                                <  1:2761307/91‑1 (MQ=255)

            tCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATg                                                                                >  1:1531110/1‑91 (MQ=255)

             cGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGa                                                                               <  2:3878861/91‑1 (MQ=255)

             cGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGa                                                                               <  2:2728473/91‑1 (MQ=255)

              gTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGaa                                                                              <  1:7067/91‑1 (MQ=255)

                gAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAAt                                                                            <  2:1269213/91‑1 (MQ=255)

                   aCTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAAtttt                                                                         >  2:298575/1‑91 (MQ=255)

                   aCTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAAtttt                                                                         <  1:2956929/91‑1 (MQ=255)

                    cTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAAttttt                                                                        >  1:1703409/1‑91 (MQ=255)

                    cTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAAttttt                                                                        >  2:3711711/1‑91 (MQ=255)

                       aGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGTCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTtgtg                                                                     <  2:3484649/91‑1 (MQ=255)

                       aGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTtgtg                                                                     <  2:2037720/91‑1 (MQ=255)

                       aGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTtgtg                                                                     >  1:1146828/1‑91 (MQ=255)

                       aGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTtgtg                                                                     >  1:3054937/1‑91 (MQ=255)

                       aGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTtgtg                                                                     >  1:216868/1‑91 (MQ=255)

                        gTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGa                                                                    >  1:784506/1‑91 (MQ=255)

                        gTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGa                                                                    >  1:2097043/1‑91 (MQ=255)

                        gTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTCACCTATCATACTGGGGAGCCCGCTTCTTTACGCAATTTTTGCGa                                                                    >  2:1215528/1‑91 (MQ=255)

                         tAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGaa                                                                   >  2:3119902/1‑91 (MQ=255)

                          aaTTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAag                                                                  >  2:1082266/1‑91 (MQ=255)

                           aTTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAaga                                                                 <  2:2755235/91‑1 (MQ=255)

                             tCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGt                                                               >  1:343110/1‑91 (MQ=255)

                              cTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTg                                                              <  1:754287/91‑1 (MQ=255)

                              cTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTg                                                              <  1:1524815/91‑1 (MQ=255)

                                tATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTCTTATATTGGGGAGCTTGCTCTTTTTTGAAATGTTTGTGAAGAGTGAt                                                            >  2:1484271/1‑91 (MQ=255)

                                tATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGAt                                                            <  1:434272/91‑1 (MQ=255)

                                tATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGAt                                                            >  1:2120005/1‑91 (MQ=255)

                                tATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGAt                                                            >  2:1448881/1‑91 (MQ=255)

                                   cATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTaa                                                         >  1:574590/1‑91 (MQ=255)

                                    aTTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAAt                                                        >  2:3249260/1‑91 (MQ=255)

                                     ttCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTACCAAATTTTTGCGAAGAGTGATTAATg                                                       >  2:3359923/1‑91 (MQ=255)

                                      tCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATgg                                                      <  2:2502340/91‑1 (MQ=255)

                                       cAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGa                                                     >  2:3275458/1‑91 (MQ=255)

                                         aaTACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGAtt                                                   <  1:2553393/91‑1 (MQ=255)

                                          aTACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTg                                                  <  2:3293173/91‑1 (MQ=255)

                                          aTACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTg                                                  <  1:1328330/91‑1 (MQ=255)

                                             cgacgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGt                                               >  2:1369894/1‑91 (MQ=255)

                                              gacgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGtt                                              >  2:232704/1‑91 (MQ=255)

                                              gacgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGtt                                              <  2:1747986/91‑1 (MQ=255)

                                              gacgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGtt                                              <  1:3119902/91‑1 (MQ=255)

                                              gacgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGtt                                              >  1:2460197/1‑91 (MQ=255)

                                               acgaTCTCAAAATGAAGCGGGCTTACCTATTACATTGGGGAGCTCGCTTTTTTATGACATTTTTGTGAAGAGTGATTAATGGATTGAGttt                                             <  2:593674/91‑1 (MQ=255)

                                                cgaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTc                                            <  1:1671827/91‑1 (MQ=255)

                                                 gaTTTGAAAATGAAGCGGGCTGACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCa                                           <  2:2793539/91‑1 (MQ=255)

                                                 gaTTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCa                                           <  1:3138604/91‑1 (MQ=255)

                                                     tGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTTTGAAGAGTGATTAATGGATTGAGTTTCATCgg                                       <  1:1403831/91‑1 (MQ=255)

                                                     tGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCgg                                       >  2:285496/1‑91 (MQ=255)

                                                       aaaaTAAAGCGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgat                                     <  2:3738194‑M2/91‑56 (MQ=255)

                                                       aaaaTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTa                                     >  2:77031/1‑91 (MQ=255)

                                                       aaaaTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTa                                     >  1:3846258/1‑91 (MQ=255)

                                                        aaaTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAg                                    >  1:1915797/1‑91 (MQ=255)

                                                        aaaTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAg                                    <  2:3222311/91‑1 (MQ=255)

                                                         aaTAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGa                                   <  1:3277999/91‑1 (MQ=255)

                                                           tAAAGCGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaa                                 <  2:2086943‑M2/91‑60 (MQ=255)

                                                            aaaGCGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaac                                <  1:1132162‑M2/91‑61 (MQ=255)

                                                            aaaGCGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaac                                <  1:1226165‑M2/91‑61 (MQ=255)

                                                            aaaGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACa                                >  1:857265/1‑91 (MQ=255)

                                                            aaaGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACa                                <  2:2576737/91‑1 (MQ=255)

                                                             aaGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACaa                               >  1:1028429/1‑91 (MQ=255)

                                                              aGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAat                              <  1:3667555/91‑1 (MQ=255)

                                                               gCGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaacgta                             <  1:2301826‑M2/91‑64 (MQ=255)

                                                               gCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAata                             >  2:2805013/1‑91 (MQ=255)

                                                               gCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAata                             >  1:3534789/1‑91 (MQ=255)

                                                                cGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtcacgtat                            <  2:2542323‑M2/91‑65 (MQ=255)

                                                                cGGGCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaacgtat                            <  2:1622765‑M2/91‑65 (MQ=255)

                                                                cGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAatat                            >  2:1136263/1‑91 (MQ=255)

                                                                  ggCTTACCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaacgtatat                          <  2:2937655‑M2/91‑67 (MQ=255)

                                                                   gCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATg                         <  2:1599380/91‑1 (MQ=255)

                                                                   gCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATg                         >  2:3867122/1‑91 (MQ=255)

                                                                    cTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGa                        >  1:2379161/1‑91 (MQ=255)

                                                                     ttACCTATTATATTGGGGAGCGCGCTTTTCTATGAAATTTTTGTGAAGAGGGATTAATGGATTGGGTTTCATCGGTAGAACAATATATGAt                       >  1:3402172/1‑91 (MQ=255)

                                                                       aCCTATTATATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaacgtatatttgtt                     <  2:3156347‑M2/91‑72 (MQ=255)

                                                                       aCCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATta                     <  2:1025039/91‑1 (MQ=255)

                                                                         cTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATtata                   >  1:2616264/1‑91 (MQ=255)

                                                                          tattatATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTatat                  <  2:554082/91‑1 (MQ=255)

                                                                          tattatATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTatat                  <  1:3802945/91‑1 (MQ=255)

                                                                           attatATTGGGGAGCTcgctttattttcaaatcgtcgtatttgaatgataagaattacttagtttcacgatgtaacgtatatttgtttaat                 <  2:1923935‑M2/91‑76 (MQ=255)

                                                                           attatATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAAc                                 <  2:3145200/75‑1 (MQ=255)

                                                                           attatATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATAtt                 >  1:3819162/1‑91 (MQ=255)

                                                                           attatATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATAtt                 <  1:1984270/91‑1 (MQ=255)

                                                                              atatTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGATGAGTGATTAATGGATTGAGTTTCATCGCTAGAACAATATATGATTATGTTAgt              >  1:3607672/1‑91 (MQ=255)

                                                                                atTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCAGTAGAACAATATATGATTATATTAgttg            >  1:3581016/1‑91 (MQ=255)

                                                                                atTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCAGTAGAACAATATATGATTATATTAgttg            >  1:2595932/1‑91 (MQ=255)

                                                                                 ttGGGGAGCTCGCTTTTTTATGTAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAgttgt           >  2:2452365/1‑91 (MQ=255)

                                                                                 ttGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAgttgt           <  2:2298433/91‑1 (MQ=255)

                                                                                    gggAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTAc        >  1:2998505/1‑91 (MQ=255)

                                                                                      gAGCTCGTTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACtt      >  1:935814/1‑91 (MQ=255)

                                                                                       aGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACttt     >  2:3057669/1‑91 (MQ=255)

                                                                                        gCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTtta    <  1:1287954/91‑1 (MQ=255)

                                                                                        gCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTtta    <  1:3039837/91‑1 (MQ=255)

                                                                                        gCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTtta    <  1:3489986/91‑1 (MQ=255)

                                                                                        gCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTtta    <  2:658093/91‑1 (MQ=255)

                                                                                        gCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTtta    <  2:1653106/91‑1 (MQ=255)

                                                                                         cTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTttat   >  1:2248738/1‑91 (MQ=255)

                                                                                         cTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACCttat   >  1:3235861/1‑91 (MQ=255)

                                                                                          tCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTttatt  <  1:619557/91‑1 (MQ=255)

                                                                                          tCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTttatt  <  2:2153809/91‑1 (MQ=255)

ATATACGTTACATCGTGAAACTAAGTAATTCTTATCATTCAAATACGACGATTTGAAAATAAAGCGGGCTTACCTATTATATTGGGGAGCTCGCTTTTTTATGAAATTTTTGTGAAGAGTGATTAATGGATTGAGTTTCATCGGTAGAACAATATATGATTATATTAGTTGTTACTTTATT  >  USA300TCH1516_ALE/1365674‑1365854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.