| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1456948 = | 216 (1.130) | 38 (0.210) +GTTTT |
14/150 | NT | 16.8% | intergenic (‑62/‑182) | USA300HOU_RS07230/USA300HOU_RS07235 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1918540 | 187 (0.980) | intergenic (‑258/+240) | USA300HOU_RS07235/USA300HOU_RS09510 | hypothetical protein/hypothetical protein | |||||
Only 100 of 272 total aligned reads displayed.
ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAAT > USA300TCH1516_ALE/1918451‑1918630 | atttattCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAa < 1:1148624‑M2/91‑2 (MQ=255) tttattCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAtt > 1:441107/1‑91 (MQ=32) ttattCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaa < 1:2011076‑M2/91‑4 (MQ=255) ttattCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTa > 2:3005381/1‑91 (MQ=33) tattCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTaa < 1:3591801/91‑1 (MQ=34) attCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTaaa > 1:2534360/1‑91 (MQ=35) ttCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCGTACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacg < 2:3839993‑M2/91‑7 (MQ=255) tCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaa < 1:3801477‑M2/91‑8 (MQ=255) tCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaa > 2:452606‑M2/1‑84 (MQ=255) tCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTAAAAaaaacaa > 2:818080‑M2/1‑84 (MQ=255) tAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGc < 1:2946247/91‑1 (MQ=40) aGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaag > 2:3520335‑M2/1‑81 (MQ=255) aGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaag < 1:1197971‑M2/91‑11 (MQ=255) aGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGcc < 2:150833/91‑1 (MQ=255) gCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagc < 2:3231713‑M2/91‑12 (MQ=255) gCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCa < 1:1416709/91‑1 (MQ=255) cGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagt > 1:588317‑M2/1‑77 (MQ=255) cGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAcc < 1:856672/91‑1 (MQ=255) cGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAcc > 1:2478832/1‑91 (MQ=255) cGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAcc > 2:386027/1‑91 (MQ=255) cGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAcc < 2:335554/91‑1 (MQ=255) gTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCg > 2:2796436/1‑91 (MQ=255) tAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgt < 2:1791715/91‑1 (MQ=255) agagATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAGCCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgtt < 1:333345/91‑1 (MQ=255) agagATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgtt < 1:331258/91‑1 (MQ=255) gagaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaac < 2:1864476‑M2/91‑19 (MQ=255) gaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgttgtt > 1:1782068/1‑91 (MQ=255) gaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgttgtt < 1:258132/91‑1 (MQ=255) aTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTta > 1:16955/1‑91 (MQ=255) gCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaaccctta > 1:1177661‑M2/1‑68 (MQ=255) cATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAg > 1:2681581/1‑91 (MQ=255) ttttttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTc > 1:3041715/1‑91 (MQ=255) ttttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTa > 2:3555242/1‑91 (MQ=255) ttttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTa > 1:1603605/1‑91 (MQ=255) tttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTaa < 1:1629598/91‑1 (MQ=255) ttGTGACTATGGTAGATCCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAATGAGACAACCGTTGTTATAGGCTAAc < 2:2573539/91‑1 (MQ=18) ttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTCTGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAAc < 1:3868118/91‑1 (MQ=255) ttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAAc > 2:118452/1‑91 (MQ=255) tgtgACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACGATTAAAGAGCCAACCGTTGTTATAGGCTAACa < 2:787522/91‑1 (MQ=255) tgtgACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaacccttacgacactt > 1:2463880‑M2/1‑60 (MQ=255) gtgACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaacccttacgacacttt > 2:2903989‑M2/1‑59 (MQ=255) ttataaTGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAAt > 2:3234142/5‑91 (MQ=255) tgACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaacccttacgacacttta > 1:107955‑M2/1‑58 (MQ=255) tgACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAAt < 2:1371577/91‑1 (MQ=255) gACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATg > 1:2086881/1‑91 (MQ=255) cAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaacccttacgacactttaggt > 1:1727777‑M2/1‑55 (MQ=255) aaTGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaacccttacgacactttaggtt > 1:2638470‑M2/1‑54 (MQ=255) aTGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaacccttacgacactttaggttt > 2:1766943‑M2/1‑53 (MQ=255) gTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGct < 2:1238159/91‑1 (MQ=255) tAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAACGGTTGGctc < 1:3529456/91‑1 (MQ=18) aGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcc < 1:3458627/91‑1 (MQ=255) aGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTCTTCTTTTTACAAtaaacaaaagcagtaaacccttacgacactctaggtttactgc > 2:1646852‑M2/1‑48 (MQ=255) gAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcct < 1:784831/91‑1 (MQ=255) gAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcct < 2:3104641/91‑1 (MQ=255) aCCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCctct < 1:3710559/91‑1 (MQ=255) aCCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCctct < 1:325718/91‑1 (MQ=255) tttCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTAtt > 1:1897253/1‑91 (MQ=255) cTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTa > 2:236313/1‑91 (MQ=255) cTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAACGGTTGGctc > 2:2298368/1‑80 (MQ=18) tGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAt > 2:2620107/1‑91 (MQ=255) aaaCCATACGC‑TATGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtg > 1:1328775/2‑91 (MQ=39) aaCCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTCTAGTCTTACAATGGTTGGCTCCTCTTATTTTAtgt < 2:377279/91‑1 (MQ=255) aaCCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtgt > 1:547377/1‑91 (MQ=255) aCCATACGCTAT‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTCAtgtg > 2:929472/1‑91 (MQ=255) cATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCt < 2:2086881/91‑1 (MQ=255) aTACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTa < 2:1782042/91‑1 (MQ=255) cATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAt > 2:2156627/1‑91 (MQ=255) cATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAt < 2:2490321/91‑1 (MQ=255) ctatgCGTATGGCTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAt > 1:2982153/5‑91 (MQ=255) tatgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAtt > 1:1512919/4‑91 (MQ=255) tatgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAtt > 2:2017544/4‑91 (MQ=255) atgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAttt > 1:3056925/3‑91 (MQ=255) atgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAttt > 2:868065/3‑91 (MQ=255) a‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTACAAATTta > 2:2741171/1‑91 (MQ=255) a‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATCta > 2:2741393/1‑91 (MQ=255) tATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAgg < 2:3388483/91‑1 (MQ=255) tATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAgg < 1:2816833/91‑1 (MQ=255) aTGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGc > 2:2241502/1‑91 (MQ=255) aTGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGc > 2:3561390/1‑91 (MQ=255) aTGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGc > 1:1841279/1‑91 (MQ=255) aTGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGACTCCTCTTATTTTATGTGCTAAAAATTTATAGGc > 2:1335529/1‑91 (MQ=255) tGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCa < 2:1259178/91‑1 (MQ=255) ggTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCaa > 2:2527895/1‑91 (MQ=255) ggTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCaa < 1:3066516/91‑1 (MQ=255) gTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAAt < 1:2237568/91‑1 (MQ=255) ttttCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAAtt > 1:1011396/1‑91 (MQ=255) ttCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAAtttt < 1:95646/91‑1 (MQ=255) cTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttat < 2:3049311/91‑1 (MQ=255) cTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttat < 2:1567076/91‑1 (MQ=255) tttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttatt < 2:1088412/91‑1 (MQ=255) tttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttatt < 2:2698670/91‑1 (MQ=255) ttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttatta < 1:2063701/91‑1 (MQ=255) ttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTa > 1:2304806/1‑66 (MQ=255) ttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTaca > 1:1462914/1‑91 (MQ=255) ttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTaca < 1:1272306/91‑1 (MQ=255) tACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTacaa > 1:670950/1‑91 (MQ=255) aCAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTacaac > 1:3124821/1‑91 (MQ=255) cAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTacaaca > 1:994491/1‑91 (MQ=255) aaTTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTAcaacaa < 2:1454750/91‑1 (MQ=255) aTTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAAt > 1:3633038/1‑91 (MQ=255) | ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAAT > USA300TCH1516_ALE/1918451‑1918630 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |