New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1868935 =162 (0.850)29 (0.170) 18/142 NT 16.2% intergenic (‑342/+128) ytnP/trmB putative quorum‑quenching lactonase YtnP/tRNA (guanine‑N(7)‑)‑methyltransferase
?USA300TCH1516_ALE 1868982 = 156 (0.920)intergenic (‑389/+81) ytnP/trmB putative quorum‑quenching lactonase YtnP/tRNA (guanine‑N(7)‑)‑methyltransferase

Only 100 of 254 total aligned reads displayed.

AATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATTTTTGT  >  USA300TCH1516_ALE/1868893‑1869072
                                                                                         |                                                                                          
aaTTATAGAGATAATTGCGCTTTTTTTTTTTTCAAAATTAAAAAATCGGACAGATTGAAAGTTAAAAACTTTTTCCATTAGTTCGGTttat                                                                                           >  2:1976750/1‑91 (MQ=21)
aaTTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATttat                                                                                           >  1:136352/1‑91 (MQ=255)
 aTTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATttatt                                                                                          >  2:496014/1‑91 (MQ=255)
  tttcgtactataatggttctatagataaaggttctataaaAAATCGGACAGATGAAAAGTTAATAACTTTTTCCATCAGTCCGATttatta                                                                                         >  1:832716‑M1/41‑91 (MQ=255)
   tataGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTtattat                                                                                        <  2:539540/91‑1 (MQ=255)
     taGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAg                                                                                      <  2:3685456/91‑1 (MQ=255)
     taGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAg                                                                                      >  2:2954804/1‑91 (MQ=255)
      agagATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGa                                                                                     <  2:307036/91‑1 (MQ=255)
        agaTAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAAc                                                                                   <  1:1860315/91‑1 (MQ=255)
         gaTAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAAcc                                                                                  >  1:1556182/1‑91 (MQ=255)
         ctataatggttctatagataaaggttctataatAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAAcc                                                                                  >  1:2596281‑M1/34‑91 (MQ=255)
             aTTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGATAGAAAAAAAGTAGAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTa                                                                              <  2:3192801/91‑1 (MQ=18)
             aTTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTa                                                                              >  1:2058360/1‑91 (MQ=255)
               tGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATc                                                                            >  2:1297487/1‑91 (MQ=255)
                gcgcTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCt                                                                           >  1:383079/1‑91 (MQ=255)
                gcgcTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCt                                                                           >  1:526272/1‑91 (MQ=255)
                  gcTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAGAGTTAAAAACTTTTTCCATCAGTCCAATTTATTATAGAACCTTTATCtat                                                                         >  2:3610922/1‑91 (MQ=255)
                  gcTTTTTTCATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCGGTCCGATTTATTATAGAACCTTTATCtat                                                                         <  2:3372810/91‑1 (MQ=255)
                   cTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCtata                                                                        <  2:2530795/91‑1 (MQ=255)
                    tttttttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAg                                                                       <  1:3822974/91‑1 (MQ=255)
                     ttttttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGa                                                                      <  1:1058296/91‑1 (MQ=255)
                     ttttttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGa                                                                      <  1:1089726/91‑1 (MQ=255)
                      tttttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGaa                                                                     >  2:2237386/1‑91 (MQ=255)
                         ttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCa                                                                  <  2:3435052/91‑1 (MQ=255)
                          tataTTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCAt                                                                 <  2:3161571/91‑1 (MQ=255)
                          tataTTCAAAATCAAAAAATCGGACAGACGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCAt                                                                 >  1:1579540/1‑91 (MQ=255)
                            tatTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATta                                                               <  1:2152527/91‑1 (MQ=255)
                             atTCAAAGTCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATtat                                                              <  1:1928728/91‑1 (MQ=255)
                             atTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATtat                                                              <  2:212626/91‑1 (MQ=255)
                             atTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATtat                                                              <  1:1465055/91‑1 (MQ=255)
                              ttCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATtaaa                                                             <  2:1923335/91‑3 (MQ=255)
                                caaaatcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGt                                                           <  2:185938/91‑1 (MQ=255)
                                 aaaatcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTa                                                          >  1:2530/1‑91 (MQ=255)
                                   aatcaaaaAATCGGACAGATGAAAAGTTAAAGACTTTTTCCATCGGTCCGATTCATTGTAGAACCTTTATCTATAGAACCATTATAGTACg                                                        <  1:3097804/91‑1 (MQ=25)
                                   aatcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACg                                                        <  1:1810473/91‑1 (MQ=255)
                                   aatcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACg                                                        <  1:3631654/91‑1 (MQ=255)
                                    atcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGa                                                       >  2:1448282/1‑91 (MQ=255)
                                      caaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGa                                                                                     <  1:1220318/59‑1 (MQ=255)
                                       aaaaaaTCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGaaaa                                                    >  1:792147/1‑91 (MQ=255)
                                       aaaaaaTCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGaaaa                                                    >  2:1261804/1‑91 (MQ=255)
                                        ataaatcggactgatggaaaaagtttttaacttttcatctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGaaaaa                                                   >  1:3241805‑M2/50‑91 (MQ=255)
                                        aaaaaTCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGaaaaa                                                   >  2:1133548/1‑91 (MQ=255)
                                         aaaaTCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGaaaaaa                                                  <  2:2715304/91‑1 (MQ=255)
                                          aaatcggactgatggaaaaagtttttaacttttcatctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAac                                                 >  1:485672‑M2/48‑91 (MQ=255)
                                          AAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAac                                                 <  1:2867969‑M1/91‑1 (MQ=255)
                                           AATCGGACATATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAaca                                                >  1:3724533‑M1/1‑91 (MQ=255)
                                           AATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAaca                                                >  2:66052‑M1/1‑91 (MQ=255)
                                            atcggactgatggaaaaagtttttaacttttcatctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTCCGAAAAAacac                                               >  1:3513903‑M2/46‑91 (MQ=255)
                                            ATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAacac                                               >  1:525140‑M1/1‑91 (MQ=255)
                                              cggactgatggaaaaagtttttaacttttcatctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACtt                                             >  1:2932184‑M2/44‑91 (MQ=255)
                                               ggactgatggaaaaagtttttaacttttcatctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTa                                            >  1:1067858‑M2/43‑91 (MQ=255)
                                               attCAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATCATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTa                                            >  2:3488415‑M1/4‑91 (MQ=255)
                                               GGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTa                                            >  2:377983‑M1/1‑91 (MQ=255)
                                               GGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTa                                            >  2:383079‑M1/1‑91 (MQ=255)
                                                gactgatggaaaaagtttttaacttttcatctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTAt                                           >  2:2177124‑M2/42‑91 (MQ=255)
                                                 actgatggaaaaagtttttaacttttcatctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg                                          >  2:1019300‑M2/41‑91 (MQ=255)
                                                 ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACt                                              >  1:1177138‑M1/1‑87 (MQ=255)
                                                 ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg                                          <  1:2640230‑M1/91‑1 (MQ=255)
                                                 ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg                                          <  2:1084852‑M1/91‑1 (MQ=255)
                                                 ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg                                          <  1:1329849‑M1/91‑1 (MQ=255)
                                                  CAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGa                                         <  1:3549101‑M1/91‑1 (MQ=255)
                                                  CAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGa                                         >  1:211990‑M1/1‑91 (MQ=255)
                                                   aGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGAt                                        <  1:7160/91‑1 (MQ=255)
                                                   aGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGAt                                        <  2:1661442/91‑1 (MQ=255)
                                                   aGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGAt                                        <  1:1773277/91‑1 (MQ=255)
                                                   aGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGAt                                        <  1:734443/91‑1 (MQ=255)
                                                   aGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATAAAAAAAAAAAAAAACACTTATGAt                                        <  2:1883672/91‑1 (MQ=21)
                                                    gATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCAAAATAAAAAGAAAAAACACTTATGAtt                                       <  2:874566/91‑1 (MQ=25)
                                                     atggaaaaagtttttaacttttcatctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTg                                      >  1:3792883‑M2/37‑91 (MQ=255)
                                                     atggaaaaagtttttaacttttcatctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTg                                      >  1:890968‑M2/37‑91 (MQ=255)
                                                     aTGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGAttt                                      >  1:227036/1‑90 (MQ=255)
                                                     aTGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTg                                      <  1:3397681/91‑1 (MQ=255)
                                                      tggaaaaagtttttaacttttcatctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGt                                     >  1:1030305‑M2/36‑91 (MQ=255)
                                                      tGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGt                                     <  1:966883/91‑1 (MQ=255)
                                                        gaaaaagtttttaacttttcatctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAt                                   >  2:3531269‑M2/34‑91 (MQ=255)
                                                        aaaaGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAt                                   <  2:723723/91‑1 (MQ=255)
                                                         aaaaagtttttaacttttcatctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAtg                                  >  1:3589371‑M2/33‑91 (MQ=255)
                                                           aGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAtgtg                                <  1:2800618/91‑1 (MQ=255)
                                                             ttAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTa                              <  2:2643396/91‑1 (MQ=255)
                                                              tAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTAc                             <  1:504986/91‑1 (MQ=255)
                                                              gtttttaacttttcatctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTAc                             >  1:1688544‑M2/28‑91 (MQ=255)
                                                               aaaaaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACa                            <  2:1184094/91‑1 (MQ=255)
                                                               aaaaaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACa                            >  1:3085850/1‑91 (MQ=255)
                                                               aaaaaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACa                            <  1:2968738/91‑1 (MQ=255)
                                                                 aaaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATa                          >  2:189353/1‑91 (MQ=255)
                                                                     tttttCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCt                      >  1:1463821/1‑91 (MQ=255)
                                                                      ttttCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGAGGGTATGTACACATAcaatc                     <  1:2953763/91‑5 (MQ=37)
                                                                         tCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATa                  >  2:1327129/1‑91 (MQ=255)
                                                                          ccATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATaa                 >  2:1770234/1‑91 (MQ=255)
                                                                             tCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTg              <  2:1204927/91‑1 (MQ=255)
                                                                             tCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTg              <  1:255907/91‑1 (MQ=255)
                                                                             tCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGAGGGTATGTACACATACAATCATAAGTg              <  2:2590063/91‑1 (MQ=21)
                                                                              ctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGc             <  2:1030305‑M2/80‑1 (MQ=255)
                                                                              cAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGc             <  1:37551/91‑1 (MQ=255)
                                                                              cAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGc             <  2:2058451/91‑1 (MQ=255)
                                                                                gtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGctc           <  1:314651‑M2/82‑1 (MQ=255)
                                                                                gtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGctc           <  2:2426359‑M2/82‑1 (MQ=255)
                                                                                 tccgatttATTATAGAACCTTTATCTATAGAACCATTATAGGACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGctct          <  2:3410390‑M2/83‑1 (MQ=255)
                                                                                     atttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTAttt      >  1:3658245‑M2/5‑91 (MQ=255)
                                                                                         attatAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATTTTtgt  >  1:583472/1‑91 (MQ=255)
                                                                                         |                                                                                          
AATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATTTTTGT  >  USA300TCH1516_ALE/1868893‑1869072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.