BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2091221	189 (0.990)	10 (0.100) +TTTTATTTATTGTTGTAATTATGGTAATATGCAGAAG	5/86	NT	9.2%	intergenic (‑455/+83)	USA300HOU_RS10575/USA300HOU_RS10590	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2265802	181 (0.950)	10 (0.100) +TTTTATTTATTGTTGTAATTATGGTAATATGCAGAAG	5/86	NT	9.2%	intergenic (+665/+364)	USA300HOU_RS11590/hin_3	hypothetical protein/DNA‑invertase hin

Only 100 of 227 total aligned reads displayed.

AGACATGCTAGTCCTTTCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGATAAACAGTTGAGTGACA  >  USA300TCH1516_ALE/2265712‑2265892

aGACATGCTAGTCCTTTCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCa                                                                                            >  1:3160726/1‑91 (MQ=255)

 gACATGCTAGTCCTTTCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCaa                                                                                           <  1:738618/91‑1 (MQ=255)

 gACATGCTAGTCCTTTCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCaa                                                                                           >  1:11473/1‑91 (MQ=255)

    aTGCTAGTCCTTTCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCaataa                                                                                        <  2:349399/91‑1 (MQ=255)

     tGCTAGTCCTTTCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCaataaa                                                                                       >  2:2760586/1‑91 (MQ=255)

     tGCTAGTCCTTTCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCaataaa                                                                                       <  1:115252/91‑1 (MQ=255)

      gCTAGTCCTTTCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCaataaat                                                                                      >  2:2562247/1‑91 (MQ=255)

      gCTAGTCCTTTCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCaataaat                                                                                      >  1:1663286/1‑91 (MQ=255)

       cTAGTCCTTCCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCaataaata                                                                                     >  2:3004495/1‑91 (MQ=255)

         aGTCCTTTCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAAtatt                                                                                   <  2:3205465/91‑1 (MQ=255)

          gTCCTTTTTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAAtatta                                                                                  <  2:3451641/91‑1 (MQ=255)

           tCCTTTCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAAtattat                                                                                 <  2:129779/91‑1 (MQ=255)

           tCCTTTCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAAtattat                                                                                 >  1:1224194/1‑91 (MQ=255)

             cTTTCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATaa                                                                               >  2:1387468/1‑91 (MQ=255)

               ttCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACa                                                                             >  2:777515/1‑91 (MQ=255)

               ttCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACa                                                                             <  2:3280932/91‑1 (MQ=255)

               ttCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACa                                                                             <  2:354304/91‑1 (MQ=255)

               ttCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACa                                                                             <  2:865864/91‑1 (MQ=255)

                tCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACAt                                                                            <  2:934488/91‑1 (MQ=255)

                tCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACAt                                                                            >  2:2276314/1‑91 (MQ=255)

                tCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACAt                                                                            >  1:190471/1‑91 (MQ=255)

                 cTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATg                                                                           <  1:2055697/91‑1 (MQ=255)

                 cTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATg                                                                           <  1:826227/91‑1 (MQ=255)

                  tAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGc                                                                          <  1:661422/91‑1 (MQ=255)

                    ggAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGcac                                                                        <  1:1720118/91‑1 (MQ=255)

                      aGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAGCTTGCTCATTAAATATTATAACATGCacac                                                                      <  2:577430/91‑1 (MQ=255)

                      aGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCacac                                                                      <  1:469890/91‑1 (MQ=255)

                       gTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACt                                                                     >  1:2658057/1‑91 (MQ=255)

                           caacTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTa                                                                 >  2:2009418/1‑91 (MQ=255)

                             acTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTaaa                                                               >  1:785256/1‑91 (MQ=255)

                             acTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTaaa                                                               >  2:642329/1‑91 (MQ=255)

                             acTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTaaa                                                               >  2:3645804/1‑91 (MQ=255)

                              cTATAGCCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAAc                                                              <  2:3143746/91‑1 (MQ=255)

                                ataACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAg                                                            <  1:3560405/91‑1 (MQ=255)

                                ataACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAg                                                            <  1:2310891/91‑1 (MQ=255)

                                ataACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAg                                                            <  2:2910350/91‑1 (MQ=255)

                                   aCCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTaa                                                         >  2:956647/1‑91 (MQ=255)

                                   aCCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTaa                                                         >  2:2055406/1‑91 (MQ=255)

                                     cATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAAtt                                                       >  2:1713295/1‑91 (MQ=255)

                                      aTAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTc                                                      <  2:504851/91‑1 (MQ=255)

                                      aTAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTc                                                      <  1:2890074/91‑1 (MQ=255)

                                      aTAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTc                                                      <  1:268294/91‑1 (MQ=255)

                                           cATCACCCCTTTATTAAGAGATTCGCCAACATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTAATAGt                                                 >  1:1667175/1‑91 (MQ=255)

                                           cATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGt                                                 <  2:1332598/91‑1 (MQ=255)

                                            aTCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGta                                                <  2:2089658/91‑1 (MQ=255)

                                              cACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGtata                                              >  2:414562/1‑91 (MQ=255)

                                              cACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGtata                                              <  1:2569844/91‑1 (MQ=255)

                                                ccccTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAg                                            >  1:2527310/1‑91 (MQ=255)

                                                  ccTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGtt                                          <  2:1089899/91‑1 (MQ=255)

                                                   cTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGttt                                         >  2:217598/1‑91 (MQ=255)

                                                     ttattaAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGttttt                                       >  1:3779463/1‑91 (MQ=255)

                                                       attaAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTc                                     <  1:3819873/91‑1 (MQ=255)

                                                       attaAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTc                                     <  2:1934874/91‑1 (MQ=255)

                                                        ttaAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATCGTATAAGTTTTTTCa                                    <  1:3307907/91‑1 (MQ=255)

                                                        ttaAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCa                                    <  2:3734798/91‑1 (MQ=255)

                                                        ttaAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCa                                    >  2:529232/1‑91 (MQ=255)

                                                         taAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCAt                                   >  1:1785494/1‑91 (MQ=255)

                                                         taAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCAt                                   >  1:2954168/1‑91 (MQ=255)

                                                         taAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCAt                                   >  1:2592418/1‑91 (MQ=255)

                                                         taAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCAt                                   <  1:2120203/91‑1 (MQ=255)

                                                          aaGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCAtt                                  >  2:3006207/1‑91 (MQ=255)

                                                          aaGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCAtt                                  >  2:1642886/1‑91 (MQ=255)

                                                          aaGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCAtt                                  >  2:273307/1‑91 (MQ=255)

                                                          aaGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCAtt                                  >  1:2455417/1‑91 (MQ=255)

                                                             agaTTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCt                               <  2:2527310/91‑1 (MQ=255)

                                                             agaTTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCt                               >  1:1072761/1‑91 (MQ=255)

                                                             agaTTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCt                               >  1:1009023/1‑91 (MQ=255)

                                                              agatagcCACCATCTATCCAACTTGCTCActtctgcatattaccataattacaacaataaataaaaagtcagtgcttcggtactgactttt                              >  1:1015847‑M2/4‑29 (MQ=255)

                                                               aTTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATGTCTTa                             >  2:3585091/1‑91 (MQ=255)

                                                                ttAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAGACAGTAATTCATAGTATAAGTTTTTTCATTTCTTac                            >  2:3841689/1‑90 (MQ=255)

                                                                ttAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTaa                            <  2:1530013/91‑1 (MQ=255)

                                                                ttAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTaa                            <  2:1501479/91‑1 (MQ=255)

                                                                ataGCCACCATCTATCCAACTTGCTCActtcggcatattaccatgattacaacgatagataaaaagtcagtgcttcggtactgacttttta                            >  1:3102739‑M2/2‑27 (MQ=255)

                                                                 tAGCCACCATCTATCCAACTTGCTCActtctgcatattaccataattacaacaataaataaaaagtcagtgcttcggtactgactttttat                           >  1:624319‑M2/1‑26 (MQ=255)

                                                                 tAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAAt                           <  1:528427/91‑1 (MQ=255)

                                                                  aGCCACCATCTATCCAACTTGCTCActtctgcatattaccataattacaacaataaataaaaagtcagtgcttcggtactgactttttatt                          >  1:2010879‑M2/1‑25 (MQ=255)

                                                                  aGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATc                          >  1:3759353/1‑91 (MQ=255)

                                                                   gCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCa                         <  2:3494730/91‑1 (MQ=255)

                                                                    ccaccaTCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCaa                        <  1:2319596/91‑1 (MQ=255)

                                                                     caccaTCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAAc                       <  1:3545628/91‑1 (MQ=255)

                                                                      accaTCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACt                      <  2:77294/91‑1 (MQ=255)

                                                                       ccaTCTATCCAACTTGCTCAATAAATATTATAACATg                                                                           <  2:232931/37‑1 (MQ=255)

                                                                       ccaTCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTc                     <  2:3628043/91‑1 (MQ=255)

                                                                        caTCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCg                    <  1:1248043/91‑1 (MQ=255)

                                                                         aTCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGa                   <  1:1750099/91‑1 (MQ=255)

                                                                            tATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGATaa                <  2:3766394/91‑1 (MQ=255)

                                                                             aTCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGATaaa               <  2:1230077/91‑1 (MQ=255)

                                                                              tCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGa                   >  1:3729879/1‑86 (MQ=255)

                                                                               ccAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGATAAACa             <  2:1091659/91‑1 (MQ=255)

                                                                               ccAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGATAAACa             >  2:2646565/1‑91 (MQ=255)

                                                                                     tGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGATAAACAGTTGAg       >  1:1500573/1‑91 (MQ=255)

                                                                                      gCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGATAAACAGTTGAGt      <  2:2598291/91‑1 (MQ=255)

                                                                                      gCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGATAAACAGTTGAGt      >  1:626266/1‑91 (MQ=255)

                                                                                       cTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGATAAACAGTTGAGTg     >  1:953727/1‑91 (MQ=255)

                                                                                       cTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGATAAACAGTTGAGTg     >  2:2846551/1‑91 (MQ=255)

                                                                                       cTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGATAAACAGTTGAGTg     >  1:1408242/1‑91 (MQ=255)

                                                                                        tCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGATAAACAGTTGAGTGa    <  2:1666904/91‑1 (MQ=255)

                                                                                          aataaataTTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGATAAACAGTTGAGTGACa  <  1:2355288/91‑1 (MQ=255)

                                                                                          aataaataTTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGATAAACAGTTGAGTGACa  <  1:2009418/91‑1 (MQ=255)

                                                                                          aataaataTTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGATAAACAGTTGAGTGACa  <  1:1048056/91‑1 (MQ=255)

AGACATGCTAGTCCTTTCTAGGAGTAACAACTATAACCATAGGCATCACCCCTTTATTAAGAGATTAGCCACCATCTATCCAACTTGCTCAATAAATATTATAACATGCACACTTTTAAACAGTAATTCATAGTATAAGTTTTTTCATTTCTTAATCAACTCGATAAACAGTTGAGTGACA  >  USA300TCH1516_ALE/2265712‑2265892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.