| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2141638 = | 169 (0.890) | 16 (0.090) | 9/148 | NT | 9.5% | coding (450/1617 nt) | groL | 60 kDa chaperonin |
| ? | USA300TCH1516_ALE | 2141666 = | 147 (0.830) | coding (422/1617 nt) | groL | 60 kDa chaperonin | |||||
Only 100 of 242 total aligned reads displayed.
CCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGGT > USA300TCH1516_ALE/2141576‑2141756 | ccATCGTTACCTACTTTGTCCATAGCTTCAGACATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAt < 1:3320916/91‑1 (MQ=255) cATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtt < 2:736545/91‑1 (MQ=255) aagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCAtt > 1:1239242‑M1/62‑91 (MQ=255) agcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCAttt > 1:3798826‑M1/61‑91 (MQ=255) tCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtttt < 1:2774788/91‑1 (MQ=255) gcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCAtttt > 1:3180852‑M1/60‑91 (MQ=255) gcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCAtttt > 1:1712236‑M1/60‑91 (MQ=255) gTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTa > 2:2170165/1‑91 (MQ=255) agttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCATTTTTa > 1:1113924‑M1/58‑91 (MQ=255) gttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCATTTTTAt > 2:1869513‑M1/57‑91 (MQ=255) tACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTAtt < 1:3702603/91‑1 (MQ=255) aCCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTAttt < 2:153356/91‑1 (MQ=255) tttCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCCACTTGCGCAATTTCATTTTTATTTTCAACttt > 2:777929/1‑91 (MQ=255) ctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaacaTGAAATCGCACCTACTTGCGCGATTTCATTTTTATTTTCAACttt > 1:3074004‑M1/47‑91 (MQ=255) ttCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACtttt > 1:2282106/1‑91 (MQ=255) ccATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTg > 1:1075600/1‑91 (MQ=255) cATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTga < 2:1315714/91‑1 (MQ=255) cATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTga < 1:239761/91‑1 (MQ=255) cATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTga < 2:1914256/91‑1 (MQ=255) aTAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag > 2:1775721/1‑91 (MQ=255) aTAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag < 1:250290/91‑1 (MQ=255) tAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgaga < 2:2047627/91‑1 (MQ=255) cTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCCATTTCATTTTTATTTTCAACTTTTTGAGAAtt > 2:3469313/1‑91 (MQ=255) ttCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAAttt < 2:2790991/91‑1 (MQ=255) tCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAAtttt > 2:1123831/1‑91 (MQ=255) aGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCTATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCa > 2:3501708/1‑91 (MQ=255) aGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCa < 2:1034398/91‑1 (MQ=255) aaaTATAACGTGCAATTTCTTCGCCTGCTGCTGAAATCGCACCTACTTGAGCAATTTCAGTTTTATTTTCAACTTTTTGAGAATTTTCATg < 2:2954252/91‑1 (MQ=255) aaaTATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATg < 2:914939/91‑1 (MQ=255) aaaTATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATg < 2:2633230/91‑1 (MQ=255) aaaTATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATg < 1:720037/91‑1 (MQ=255) atatAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTa < 1:2926852/91‑1 (MQ=255) tataACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTGTTTGAGAATTTTCATGTaa > 1:1153480/1‑91 (MQ=255) aCGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCt > 2:3254942/1‑91 (MQ=255) gTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTc < 2:3119198/91‑1 (MQ=255) ccAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCaa < 1:2358590/91‑1 (MQ=255) aTTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAg > 2:1443673/1‑91 (MQ=255) aTTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAg > 2:1695324/1‑91 (MQ=255) tttCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGc > 1:1469539/1‑91 (MQ=255) ttcATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACt > 1:3366508/1‑91 (MQ=255) aTCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTa < 2:3417584/91‑1 (MQ=255) aTCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTa < 1:3052450/91‑1 (MQ=255) tCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTaa < 2:321171/91‑1 (MQ=255) tCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTaa < 1:889804/91‑1 (MQ=255) tCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTaa < 2:376832/91‑1 (MQ=255) tCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGGAACGCTTCAACAGCAACTTTaa < 2:3403007/91‑1 (MQ=255) tCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAAAATTTTCATGTAACGCTTCAACAGCAACTTTaa > 1:3439251/1‑91 (MQ=255) ctgctgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAAc < 2:2921077/91‑1 (MQ=255) ctgctgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAAc < 2:648541/91‑1 (MQ=255) ctgctgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAAc < 1:1302502/91‑1 (MQ=255) ctgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGc > 1:681974/1‑91 (MQ=255) aaaatgaaattgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGc > 1:1735486‑M2/33‑91 (MQ=255) aaaatgaaattgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGc > 1:1730963‑M2/33‑91 (MQ=255) tgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCt < 1:2152236/91‑1 (MQ=255) gctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCtt > 2:551101/1‑91 (MQ=255) gctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCtt > 1:2676541/1‑91 (MQ=255) gctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCtt > 2:1412054/1‑91 (MQ=255) aatgaaattgcgcacgtaggtgcaatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTACCGCTTCAACTGCAACTTTAACTGCtt > 2:3510431‑M2/31‑91 (MQ=255) atgaaattgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCttt > 1:2285748‑M2/30‑91 (MQ=255) TGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTg > 2:2831953‑M1/1‑91 (MQ=255) TGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTg < 1:1063463‑M1/91‑1 (MQ=255) GAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGt < 2:3566122‑M1/91‑1 (MQ=255) GAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGt < 1:2756942‑M1/91‑1 (MQ=255) AAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTc > 2:1364361‑M1/1‑91 (MQ=255) attgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGa > 1:3290789‑M2/25‑91 (MQ=255) ATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTcgg < 1:602005‑M1/91‑2 (MQ=255) TCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGAt > 1:2007166‑M1/1‑91 (MQ=255) tgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATa > 2:3565671‑M2/23‑91 (MQ=255) tgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATa > 2:1718093‑M2/23‑91 (MQ=255) cGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATa > 1:746722/1‑91 (MQ=255) cACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCttt < 1:1566832/82‑1 (MQ=255) cACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCttt > 2:1566832/1‑82 (MQ=255) aCCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCt > 1:386863/1‑91 (MQ=255) aCCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCt < 1:2018618/91‑1 (MQ=255) ccTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCtt < 1:1384310/91‑1 (MQ=255) cTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTg > 1:289100/1‑91 (MQ=255) aCTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTc > 1:2558512/1‑91 (MQ=255) aCTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTc > 2:2344138/1‑91 (MQ=255) ttGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGt < 2:1077323/91‑1 (MQ=255) ttGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGt > 2:2911533/1‑91 (MQ=255) gcgcAATTTCATTTTTATTTTTAACTTTTTTAGAATTTTCATGTAACGCTTCAACAGCAACTTTAAATGCTTTGTCGATACCTTGTCGTaa > 2:3607029/1‑91 (MQ=255) gcgcAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTaa < 1:358217/91‑1 (MQ=255) gcAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAAc < 2:864126/91‑1 (MQ=255) aaTTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCa < 1:3727524/91‑1 (MQ=255) atttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCaa > 1:1849520‑M2/7‑91 (MQ=255) atttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCaa < 2:2162502‑M2/85‑1 (MQ=255) atttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCaa > 2:3685644‑M2/7‑91 (MQ=255) tttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAAc > 1:1840590‑M2/6‑91 (MQ=255) ttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACt < 1:3198490‑M2/87‑1 (MQ=255) ttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACt > 2:2493220‑M2/5‑91 (MQ=255) tcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTg < 2:1954942‑M2/88‑1 (MQ=255) caTTTTTATTTTCAACTTTTTTATAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTgg > 2:1454744‑M2/3‑91 (MQ=255) caTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCtttgaaa < 2:2758810‑M2/66‑4 (MQ=255) caTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTgg > 2:2543172‑M2/3‑91 (MQ=255) caTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTgg > 1:1869772‑M2/3‑91 (MQ=255) caTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTgg > 1:838582‑M2/3‑91 (MQ=255) aTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTggg > 2:1744432‑M2/2‑91 (MQ=255) aTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTggg > 1:312656‑M2/2‑91 (MQ=255) tttttATTTTCAACTTTTTGAGAATTTTCATGTAGCGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGGt < 2:2687776/91‑1 (MQ=255) tttttATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGGt > 1:611166/1‑91 (MQ=255) | CCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGGT > USA300TCH1516_ALE/2141576‑2141756 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |