BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2186610 =	206 (1.080)	9 (0.050)	7/142	NT	5.5%	coding (5/480 nt)	rsbW	Serine‑protein kinase RsbW
*	?	USA300TCH1516_ALE	2186648 =	128 (0.760)	9 (0.050)	7/142	NT	5.5%	coding (295/327 nt)	rsbV	Anti‑sigma‑B factor antagonist

Only 100 of 210 total aligned reads displayed.

TACATACTCTGCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTAATGC  >  USA300TCH1516_ALE/2186558‑2186738

tACATACTCTGCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCAt                                                                                            >  2:627167/1‑91 (MQ=255)

 tgtcagatcgtatcggtagactatttgaaattactggtcttaaggatttaaTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCAtt                                                                                           >  1:1768457‑M1/52‑91 (MQ=255)

 aCATACTCTGCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCAtt                                                                                           <  1:1036840/91‑1 (MQ=255)

 aCATACTCTGCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCAtt                                                                                           <  1:3693153/91‑1 (MQ=255)

 aCATACTCTGCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCAtt                                                                                           >  2:3698988/1‑91 (MQ=255)

 aCATACTCTGCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCAtt                                                                                           <  1:1623537/91‑1 (MQ=255)

  gtcagatcgtatcggtagactatttgaaattactggtcttaaggatttatTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTa                                                                                          >  1:3051829‑M1/51‑91 (MQ=255)

  cATACTCTGCCGGTGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTa                                                                                          <  2:3230019/91‑1 (MQ=255)

  cATACTCTGCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTa                                                                                          <  2:3025526/91‑1 (MQ=255)

  cATACTCTGCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTa                                                                                          <  2:2489251/91‑1 (MQ=255)

  cATACTCTGCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTa                                                                                          <  1:46447/91‑1 (MQ=255)

  cATACTCTGCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTa                                                                                          <  2:2874312/91‑1 (MQ=255)

     tctctGTCGTTGCTGGCACGCGCATTTCGATAAATTCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAAt                                                                                       <  2:2970169/90‑1 (MQ=255)

     aCTCTGCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAAt                                                                                       <  1:171399/91‑1 (MQ=255)

     aCTCTGCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAAt                                                                                       <  1:171135/91‑1 (MQ=255)

     aCTCTGCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAAt                                                                                       <  1:664462/91‑1 (MQ=255)

     aCTCTGCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAAt                                                                                       <  1:3129498/91‑1 (MQ=255)

     aCTCTGCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAAt                                                                                       <  1:2831852/91‑1 (MQ=255)

          gCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTa                                                                                  <  2:1007801/91‑1 (MQ=255)

          gCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTa                                                                                  >  2:229246/1‑91 (MQ=255)

          gCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTa                                                                                  >  2:869437/1‑91 (MQ=255)

             gATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGa                                                                               <  2:1736375/91‑1 (MQ=255)

              aTGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGAc                                                                              >  2:2455681/1‑91 (MQ=255)

              aTGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGAc                                                                              >  1:2781913/1‑91 (MQ=255)

              aTGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGAc                                                                              >  1:3471382/1‑91 (MQ=255)

              aTGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGAc                                                                              >  1:2473123/1‑91 (MQ=255)

               tGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGAcc                                                                             <  1:1825738/91‑1 (MQ=255)

               tGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGAcc                                                                             >  2:462793/1‑91 (MQ=255)

                 cTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTACTTCATTAACATGCATTAAATCCTTAAGACCAg                                                                           <  2:1135929/91‑1 (MQ=255)

                   ggCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTa                                                                         >  1:768301/1‑91 (MQ=255)

                   ggCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTa                                                                         >  1:1355032/1‑91 (MQ=255)

                   ggCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTa                                                                         >  1:2327996/1‑91 (MQ=255)

                   ggCACGCGCATTTCGATAAAATCTTCTTTAGATTACATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTa                                                                         <  2:2736917/91‑1 (MQ=255)

                    gCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTaa                                                                        >  1:1846190/1‑91 (MQ=255)

                          gcATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCaa                                                                  <  2:1266851/91‑1 (MQ=255)

                          gcATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCaa                                                                  >  1:2613992/1‑91 (MQ=255)

                           cATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCaaa                                                                 >  2:2195923/1‑91 (MQ=255)

                             tttCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATa                                                               >  2:2088400/1‑91 (MQ=255)

                             tttCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATa                                                               <  1:1232023/91‑1 (MQ=255)

                             tttCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATa                                                               >  1:2727143/1‑91 (MQ=255)

                              ttCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAg                                                              <  2:1946101/91‑1 (MQ=255)

                                 gATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCt                                                           >  2:3012509/1‑91 (MQ=255)

                                 gATAAAATCTTCTTTAGATTGCATGTTATACGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCt                                                           <  2:1753457/91‑1 (MQ=255)

                                   tAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTAc                                                         >  2:1476068/1‑91 (MQ=255)

                                    aaaaTCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTAcc                                                        <  1:900/91‑1 (MQ=255)

                                     aaaTCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCg                                                       <  2:3468300/91‑1 (MQ=255)

                                     aaaTCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCg                                                       <  2:3640967/91‑1 (MQ=255)

                                     aaaTCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCg                                                       >  1:2552970/1‑91 (MQ=255)

                                         cttcttTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATAc                                                   <  1:518061/91‑1 (MQ=255)

                                         cttcttTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATAc                                                   <  2:305230/91‑1 (MQ=255)

                                          ttcttTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTCAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACg                                                  <  2:3184027/91‑1 (MQ=255)

                                          ttcttTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACg                                                  <  1:2187205/91‑1 (MQ=255)

                                            cttTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGAt                                                >  1:439145/1‑91 (MQ=255)

                                            cttTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGAt                                                >  2:2711599/1‑91 (MQ=255)

                                                 gATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGac                                           <  1:1206770/91‑1 (MQ=255)

                                                   ttGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGacac                                         <  2:745001/91‑1 (MQ=255)

                                                   ttGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGacac                                         <  1:3116896/91‑1 (MQ=255)

                                                     gcatgttaatgaaggaacggaggtcgaataacatgcaTTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGacacac                                       >  1:1153720‑M2/38‑91 (MQ=255)

                                                     GCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGacacac                                       >  1:138708‑M1/1‑91 (MQ=255)

                                                      CATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGCCCAGTAATTTCAAATAGTCTACCGATACGATCTGACACAcc                                      <  2:2234873‑M1/91‑1 (MQ=255)

                                                      CATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACAcc                                      <  1:2923648‑M1/91‑1 (MQ=255)

                                                      CATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACAcc                                      >  2:2990590‑M1/1‑91 (MQ=255)

                                                      CATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACAcc                                      >  1:716888‑M1/1‑91 (MQ=255)

                                                       ATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCt                                     <  2:645924‑M1/91‑1 (MQ=255)

                                                        TGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTa                                    <  2:785557‑M1/91‑1 (MQ=255)

                                                        TGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTa                                    <  2:2063446‑M1/91‑1 (MQ=255)

                                                         gttaatgaaggaacggaggtcgaataacatgcaTTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTaa                                   >  1:1647551‑M2/34‑91 (MQ=255)

                                                         GTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTaa                                   >  2:3684017‑M1/1‑91 (MQ=255)

                                                          ttaatgaaggaacggaggtcgaataacatgcaTTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTaaa                                  >  1:1505608‑M2/33‑91 (MQ=255)

                                                           TATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATa                                                    >  2:2831558‑M1/1‑72 (MQ=255)

                                                           TATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTaaaa                                 >  1:2537663‑M1/1‑91 (MQ=255)

                                                              tCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGt                              <  2:1180026/91‑1 (MQ=255)

                                                              tCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGt                              <  2:1289462/91‑1 (MQ=255)

                                                               cGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGta                             >  1:3444208/1‑91 (MQ=255)

                                                                 aCCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGtata                           <  2:2856172/91‑1 (MQ=255)

                                                                  ccTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAg                          <  2:51135/91‑1 (MQ=255)

                                                                  ccTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAg                          >  1:1311750/1‑91 (MQ=255)

                                                                     ccGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTc                       >  2:1548832/1‑91 (MQ=255)

                                                                      cGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCt                      <  1:1535640/91‑1 (MQ=255)

                                                                       gTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCtt                     <  2:3444208/91‑1 (MQ=255)

                                                                        ttCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCttt                    <  2:1551526/91‑1 (MQ=255)

                                                                         tCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTa                   <  1:2669315/91‑1 (MQ=255)

                                                                         tCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTa                   <  2:683491/91‑1 (MQ=255)

                                                                         tCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTa                   >  1:79349/1‑91 (MQ=255)

                                                                           cTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATc                 <  2:803946/91‑1 (MQ=255)

                                                                              cATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCAtt              >  2:1899094/1‑91 (MQ=255)

                                                                              cATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCAtt              <  1:3455468/91‑1 (MQ=255)

                                                                               aTTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCAttt             >  2:3399525/1‑91 (MQ=255)

                                                                               aTTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCAttt             <  1:3200426/91‑1 (MQ=255)

                                                                               aTTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCAttt             <  2:2781913/91‑1 (MQ=255)

                                                                                ttAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGta                             >  2:919792/1‑74 (MQ=255)

                                                                                  aacatgcaTTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTgg          >  1:976902‑M2/9‑91 (MQ=255)

                                                                                     atgcaTTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGttt       <  2:2333022‑M2/86‑1 (MQ=255)

                                                                                     atgcaTTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGttt       <  1:1195698‑M2/86‑1 (MQ=255)

                                                                                     atgcaTTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGttt       <  1:2542926‑M2/86‑1 (MQ=255)

                                                                                      tgcaTTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTa      <  1:3372545‑M2/87‑1 (MQ=255)

                                                                                         aTTAAATCCTTAAGACCAGTAATTTGAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTAATg   <  1:3604964‑M2/90‑1 (MQ=255)

                                                                                         aTTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTAATg   >  1:178723‑M2/2‑91 (MQ=255)

                                                                                         aTTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTAATg   <  2:1661796‑M2/90‑1 (MQ=255)

                                                                                         aTTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTAATg   <  2:3311592‑M2/90‑1 (MQ=255)

TACATACTCTGCCGATGCTGGCACGCGCATTTCGATAAAATCTTCTTTAGATTGCATGTTATTCGACCTCCGTTCCTTCATTAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTAATGC  >  USA300TCH1516_ALE/2186558‑2186738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.