| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2201286 | 152 (0.800) | 30 (0.190) | 16/136 | NT | 18.2% | intergenic (+16/+353) | kdpE/cshA | KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA |
| ? | USA300TCH1516_ALE | = 2201313 | 141 (0.870) | intergenic (+43/+326) | kdpE/cshA | KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA | |||||
Only 100 of 260 total aligned reads displayed.
ACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTT > USA300TCH1516_ALE/2201223‑2201403 | acacATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGt < 1:2306367/91‑1 (MQ=255)acacATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGt < 2:2004876/91‑1 (MQ=255) cacaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTg > 1:2790005‑M2/1‑90 (MQ=255) cacaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTg > 1:2874447‑M2/1‑90 (MQ=255) acaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTga < 1:1759926‑M2/91‑3 (MQ=255) acaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTga < 1:969216‑M2/91‑3 (MQ=255) aTCCGCGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatc > 1:34690‑M2/1‑87 (MQ=255) ccACGCATTGGTTATCATATGTTGCAGTGGAACGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATTATTGGCAGTgatctt > 1:3317828‑M2/1‑85 (MQ=255) ccACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatctt < 2:1749485‑M2/91‑7 (MQ=255) ccACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatctt > 1:2742820‑M2/1‑85 (MQ=255) cACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttt < 1:1733418‑M2/91‑8 (MQ=255) aCGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatctttt < 2:1835414‑M2/91‑9 (MQ=255) cGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttt > 2:2730955‑M2/1‑82 (MQ=255) cGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttt > 2:1605186‑M2/1‑82 (MQ=255) gctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCtttttt > 1:1689396‑M1/43‑91 (MQ=255) ttGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTtata > 1:33898/1‑91 (MQ=255) ttGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTtata < 1:318038/91‑1 (MQ=255) ttGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTtata > 1:1277448/1‑91 (MQ=255) ggTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATAtt < 1:542985/91‑1 (MQ=255) gTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTc > 1:3770483/1‑91 (MQ=255) ttATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCa > 2:2328239/1‑91 (MQ=255) ttATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCa < 1:868875/91‑1 (MQ=255) aTCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAAc > 1:1005539/1‑91 (MQ=255) aTCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAAc < 2:3416056/91‑1 (MQ=255) cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt < 1:2248598/91‑1 (MQ=255) cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt < 2:1252678/91‑1 (MQ=255) aaaTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtta > 1:2222123/1‑91 (MQ=255) aaaTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtta < 1:1078951/91‑1 (MQ=255) ctagtgcgcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatt > 1:3340498‑M1/29‑91 (MQ=255) tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta > 2:1290623/1‑91 (MQ=255) tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta < 2:1357445/91‑1 (MQ=255) tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta > 2:1641132/1‑91 (MQ=255) tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta < 1:1427698/91‑1 (MQ=255) ttGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTattatt < 2:3253698/91‑1 (MQ=255) tGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTAttattt < 2:1271185/91‑1 (MQ=255) gCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTAttattta > 1:3559086/1‑91 (MQ=255) cAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTAttatttat < 2:1180192/91‑1 (MQ=255) aGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATc > 2:3432129/1‑91 (MQ=255) gAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCgcgc < 2:2324715/91‑1 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa > 2:3754393/1‑91 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATCATTTATCGCGCa < 1:2993958/91‑1 (MQ=255) aaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCAc < 1:2448474/91‑1 (MQ=255) agagAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACt < 1:1410165/91‑1 (MQ=255) aaaTAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta > 2:2436867/1‑74 (MQ=255) aaaTAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCg > 2:279202/1‑91 (MQ=255) aataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGt < 1:774905/91‑1 (MQ=255) ataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTc > 1:3588349/1‑91 (MQ=255) ataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTc > 1:679735/1‑91 (MQ=255) ataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTc > 2:2202462/1‑91 (MQ=255) taatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCa > 1:729163/1‑91 (MQ=255) taatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCa > 2:3586533/1‑91 (MQ=255) atTAAATATAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAGCTTATTATTTATCGCGCACTAGCGTCAGc < 2:3382458/91‑1 (MQ=255) atTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttttatttaattatttctctttccactgcaacatttgataa < 1:1329251‑M2/91‑48 (MQ=255) atTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGc < 1:3864787/91‑1 (MQ=255) aaataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaa > 2:648069/1‑91 (MQ=255) aaataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaa > 2:2443530/1‑91 (MQ=255) aataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaaa > 2:1974712/1‑91 (MQ=255) AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGc > 1:813465‑M1/1‑91 (MQ=255) aaaaGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttttatttaattatttctctttccactgcaacatttgataaccaatgcgt < 2:903115‑M2/91‑57 (MQ=255) AAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGccc > 2:776431‑M1/1‑91 (MQ=255) AAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGccc < 2:3305829‑M1/91‑1 (MQ=255) AAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGccc > 1:1852568‑M1/1‑91 (MQ=255) AAAGATCGCTGCCATTAAACGCATGATTGGCAGTGATCTTTTTTATATTCAACTTTTTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCt < 2:691362‑M1/91‑1 (MQ=255) AAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCt > 1:483959‑M1/1‑91 (MQ=255) AAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTa > 1:3761648‑M1/1‑91 (MQ=255) gATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttttatttaattatttctctttccactgcaacatttgataaccaatgcgtggat < 2:2041791‑M2/91‑61 (MQ=255) GATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTAtt > 1:2185307‑M1/1‑91 (MQ=255) GATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTAATTATTTATCGCGCAATAGCGTCAGCAAAAAGCCCTAtt > 1:1835414‑M1/1‑91 (MQ=255) aTCGCTGCCATTAAACGAATGATTGGCAGTgatcttttttatttaattatttctctttccactgcaacatttgataaccaatgcgtggatg < 1:2007994‑M2/91‑62 (MQ=255) TCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGt < 2:3829966‑M1/91‑1 (MQ=255) TCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGt < 2:3128136‑M1/91‑1 (MQ=255) CGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtt < 2:2556272‑M1/91‑1 (MQ=255) gCTGCCATTAAACGAATGATTGGCAGTgatcttttttatttaattatttctctttccactgcaacatttgataaccaatgcgtggatgtgt < 1:1190329‑M2/91‑65 (MQ=255) gCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGttt > 1:2486219/1‑91 (MQ=255) cTGCCATTAAACGAATGATTGGCAGTgatcttttttatttaattatttctctttccactgcaacatttgataaccaatgcgtggatgtgtt < 2:903155‑M2/91‑66 (MQ=255) cTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtttt > 1:2031818/1‑91 (MQ=255) cTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtttt > 1:277440/1‑91 (MQ=255) cTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGattt > 1:3129347/1‑91 (MQ=255) gCCATTAAACGAATGATTGGCAGTgatcttttttatttaattatttctctttccactgcaacatttgataaccaatgcgtggatgtgtttt < 1:3422496‑M2/91‑68 (MQ=255) gCCATTAAACGAATGATTGGCAGTgatcttttttatttaattatttctctttccactgcaacatttgataaccaatgcgtggatgtgtttt < 1:3294356‑M2/91‑68 (MQ=255) cATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTtat < 2:3075163/91‑1 (MQ=255) aTTAAACGAATGATTGGCAGTgatcttttttatttaattatttctctttccactgcaacatttgataaccaatgcgtggatgtgttttaat > 1:2082392‑M2/1‑21 (MQ=255) aTTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTtata > 1:1044911/1‑91 (MQ=255) ttAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAACAAGCCCTATTGTTTTCTATaa > 2:3575669/1‑91 (MQ=255) aaCGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGaa < 2:2816130/91‑1 (MQ=255) aaCGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGaa < 1:1963296/91‑1 (MQ=255) aCGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAAc > 2:2924650/1‑91 (MQ=255) aTGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGa < 1:623594/91‑1 (MQ=255) aTGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGa > 2:408801/1‑91 (MQ=255) gATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATa < 1:1297663/91‑1 (MQ=255) aTTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATAc < 2:2305663/91‑1 (MQ=255) aTTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATAc < 2:264271/91‑1 (MQ=255) aTTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATAc < 2:956823/91‑1 (MQ=255) tGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTg > 2:2098946/1‑91 (MQ=255) ggCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGa < 2:1686133/91‑1 (MQ=255) ggCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGa > 2:392037/1‑91 (MQ=255) ggCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGa > 1:2631324/1‑91 (MQ=255) gCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGaa > 1:251204/1‑91 (MQ=255) cAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGaaa > 2:369049/1‑91 (MQ=255) cAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGaaa < 1:2569879/91‑1 (MQ=255) | ACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTT > USA300TCH1516_ALE/2201223‑2201403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |