| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 583,960 | T→C | 6.7% | intergenic (+44/‑228) | rplA → / → rplJ | 50S ribosomal protein L1/50S ribosomal protein L10 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 583,960 | 0 | T | C | 6.7% | 654.9 / 22.1 | 210 | intergenic (+44/‑228) | rplA/rplJ | 50S ribosomal protein L1/50S ribosomal protein L10 |
| Reads supporting (aligned to +/- strand): ref base T (107/88); new base C (11/3); total (119/91) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.97e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 212 total aligned reads displayed.
CAACAATGGGTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGTTATTTATAACT > USA300TCH1516_ALE/583870‑584049 | caacaaTGGGTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGt < 1:2300264/91‑1 (MQ=255) aacaaTGGGTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTc < 1:1123070/91‑1 (MQ=255) aacaaTGGGTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTc > 1:1422309/1‑91 (MQ=255) acaaTGGGTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCt > 1:2917182/1‑91 (MQ=255) caaTGGGTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTg > 2:2690637/1‑91 (MQ=255) tGGGTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTaa < 1:2951138/91‑1 (MQ=255) gggTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTaaa < 1:3401819/91‑1 (MQ=255) gggTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTaaa < 2:3792785/91‑1 (MQ=255) gggTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTaaa < 1:1639966/91‑1 (MQ=255) gggTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTaaa > 1:3072026/1‑91 (MQ=255) gggTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGACTGAAAGATATTTCTTTCAGCCTGTaat < 1:606382/91‑2 (MQ=25) gTCCTGGAGTTAAAATTGATACTGCAGGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTaaaaa > 2:2220671/1‑91 (MQ=255) gTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGACTGAAAGATATTTCTTTCAGCCTGTaattg < 2:1077700/91‑4 (MQ=25) tCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAat > 2:2813448/1‑91 (MQ=255) cTGGAGTTAAAATTGATACTGCAAGTTTCAAATGATAAATGGTATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAatat < 2:3881583/91‑1 (MQ=255) ggAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAatatat > 1:3250693/1‑91 (MQ=255) ggAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAatatat < 1:2309861/91‑1 (MQ=255) aGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTg > 2:193137/1‑91 (MQ=255) ttAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTACAAATATATTGAc > 2:3226025/1‑91 (MQ=255) tAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACa > 2:3540504/1‑91 (MQ=255) tAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACa > 2:3541472/1‑91 (MQ=255) aaaaTTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACaa > 1:989022/1‑91 (MQ=255) aaaTTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAAt > 1:2424609/1‑91 (MQ=255) aaaTTGATACTGAAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAAt > 1:2996190/1‑91 (MQ=255) aTTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATaa > 2:2329036/1‑91 (MQ=255) aTTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATaa > 1:2203557/1‑91 (MQ=255) ttGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAg > 1:1492464/1‑91 (MQ=255) ttGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAg < 2:2589567/91‑1 (MQ=255) tGATACTGCAAGTTTCGAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGt < 1:2132228/91‑1 (MQ=255) aTACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTaa > 2:1611111/1‑91 (MQ=255) aTACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTaa > 1:395704/1‑91 (MQ=255) aTACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTaa > 1:2223847/1‑91 (MQ=255) tttCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGtt < 2:2305077/91‑1 (MQ=255) tttCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGtt < 2:2234309/91‑1 (MQ=255) tttCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGtt < 2:2108016/91‑1 (MQ=255) tCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTtat < 2:359754/91‑1 (MQ=255) cAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTtata < 2:1874055/91‑1 (MQ=255) aataatAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTg < 2:2541171/65‑1 (MQ=255) aataatAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTg > 1:2541171/1‑65 (MQ=255) aataatAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATAtt > 1:1731519/1‑91 (MQ=255) aataatAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATAtt < 2:3038147/91‑1 (MQ=255) aataatAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATAtt > 1:1235419/1‑91 (MQ=255) aataatAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATAtt < 1:2467004/91‑1 (MQ=255) taataaATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTAc < 2:2191541/91‑1 (MQ=255) aataaATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTTACAATAAGTAATTTCCAAGTTATATTACt > 2:2290768/1‑91 (MQ=255) aataaATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACt < 1:350942/91‑1 (MQ=255) aataaATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACt < 2:1939445/91‑1 (MQ=255) aataaATGATACAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATAGTGACAATAAGTAATTTCCAAGTTATATTACt < 2:2969284/91‑1 (MQ=255) aaaTGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTAt > 1:1389277/1‑91 (MQ=255) aaTGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTAtt > 2:350129/1‑91 (MQ=255) aTGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATtg > 1:2353360/1‑91 (MQ=255) tGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATtgt > 2:3683287/1‑91 (MQ=255) tGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATtgt > 2:3683342/1‑91 (MQ=255) gATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATtgtg > 2:3333946/1‑91 (MQ=255) gATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATtgtg > 1:3542663/1‑91 (MQ=255) atatAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGa > 1:886338/1‑91 (MQ=255) atatAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGa > 2:1222401/1‑91 (MQ=255) atatAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGa > 1:886571/1‑91 (MQ=255) taAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGatta > 1:608015/1‑91 (MQ=255) aaaCAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGattat < 1:3868796/91‑1 (MQ=255) aaCAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGattatt > 1:3766356/1‑91 (MQ=255) aCAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTAttt < 1:946127/91‑1 (MQ=255) aCAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTAttt > 2:548570/1‑91 (MQ=255) tttACAGACTGAAAGATATTTCTTTCAGCCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTAc > 2:899914/2‑91 (MQ=25) tACAGACTGAAAGATATTTCTTTCAGCCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCt > 1:3383954/1‑91 (MQ=37) aCAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTa > 2:302605/1‑91 (MQ=255) aCAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTa > 1:59563/1‑91 (MQ=255) cAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTaa < 1:416530/91‑1 (MQ=255) cAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTaa < 2:785071/91‑1 (MQ=255) aGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAg < 1:1070614/91‑1 (MQ=255) aGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAg < 1:1665206/91‑1 (MQ=255) aGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAg > 1:1284270/1‑91 (MQ=255) ggCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGa < 2:2278633/91‑1 (MQ=255) ggCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGa > 2:1552034/1‑91 (MQ=255) ggCTGAAAGAAATATCTATCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGa < 1:3330108/91‑1 (MQ=255) gacTGAAAGATATTTCTTTCAGCCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATTTTACTTATTGAGATTATTTTACCTAAGa > 1:755556/3‑91 (MQ=37) gacTGAAAGATATTTCTTTCAGCCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGa > 2:1087962/3‑91 (MQ=38) gacTGAAAGATATTTCTTTCAGCCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGa > 2:706821/3‑91 (MQ=38) gacTGAAAGATATTTCTTTCAGCCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGa > 1:3465073/3‑91 (MQ=38) tGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAg < 1:2113509/91‑1 (MQ=255) aaagaaaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTa < 1:264533/91‑1 (MQ=255) gaaaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGa > 1:899067/1‑91 (MQ=255) gaaaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGa < 1:3677736/91‑1 (MQ=255) aaaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAg < 2:2429577/91‑1 (MQ=255) tatttCTTTCAGCCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGt > 2:619000/5‑91 (MQ=255) aaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACGTAAGACAGTAGGAGt > 1:1446137/1‑91 (MQ=255) aaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGt > 1:2714126/1‑91 (MQ=255) aaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGt > 1:348070/1‑91 (MQ=255) aaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGt > 1:73315/1‑91 (MQ=255) aaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGt > 1:1442752/1‑91 (MQ=255) aaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGt > 2:177588/1‑91 (MQ=255) tatCTTTCAGTCTGTTAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTACTGTGATTATTTTACCTAAGACAGTAGGAGtta > 1:3308247/1‑91 (MQ=255) tatCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGtta > 1:2270237/1‑91 (MQ=255) tatCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGtta > 2:1306137/1‑91 (MQ=255) atCTTCCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGttat < 2:3675059/91‑1 (MQ=255) tCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGttatt > 2:1463410/1‑91 (MQ=255) cTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGttattt > 2:1593709/1‑91 (MQ=255) ttCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGttataaat < 1:1552034/91‑5 (MQ=255) aGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGTTATTTATAAc < 2:417305/91‑1 (MQ=255) aGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGTTATTTATAAc < 1:1057695/91‑1 (MQ=255) | CAACAATGGGTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGTTATTTATAACT > USA300TCH1516_ALE/583870‑584049 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |