| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 770,870 | T→A | 9.3% | intergenic (+56/‑194) | ybaK → / → glcR | Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase YbaK/HTH‑type transcriptional repressor GlcR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 770,870 | 0 | T | A | 9.3% | 761.0 / 50.3 | 237 | intergenic (+56/‑194) | ybaK/glcR | Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase YbaK/HTH‑type transcriptional repressor GlcR |
| Reads supporting (aligned to +/- strand): ref base T (99/116); new base A (12/10); total (111/126) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.05e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.01e-01 | |||||||||||
Only 100 of 252 total aligned reads displayed.
TAAAGGCAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAA > USA300TCH1516_ALE/770781‑770960 | tAAAGGCAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAAttttt > 1:2682668/1‑91 (MQ=255) aaGGCAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTtat < 2:96433/91‑1 (MQ=255) aaGGCAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTtat > 1:3150480/1‑91 (MQ=255) aGGCAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTtata > 2:2647759/1‑91 (MQ=255) aGGCAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTtata < 1:3537067/91‑1 (MQ=255) cAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATaaaa < 2:3242140/91‑1 (MQ=255) cAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATaaaa > 2:1702686/1‑91 (MQ=255) cAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATaaaa < 1:1176436/91‑1 (MQ=255) aaaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑t < 2:2630674/91‑1 (MQ=255) aaaaTTGGAGCAGATATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑t > 2:1316108/1‑91 (MQ=255) aaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑tt > 1:2081103/1‑91 (MQ=255) aaaTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑tt > 1:2222620/1‑91 (MQ=255) aTTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCa < 1:200088/91‑1 (MQ=255) tGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCAtt < 2:1862805/91‑1 (MQ=255) tGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCAtt < 1:2981300/91‑1 (MQ=255) ggAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCAttt > 1:813227/1‑91 (MQ=255) ggAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCAttt > 2:804837/1‑91 (MQ=255) gAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAGAA‑‑TTCATTTc < 2:1054507/91‑1 (MQ=255) gAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTc > 2:2463069/1‑91 (MQ=255) cAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTgt < 2:2786196/91‑2 (MQ=17) aGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGcc < 2:2740997/91‑1 (MQ=255) ttATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCcac > 2:1600255/1‑91 (MQ=255) ttATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCcac < 2:3872525/91‑1 (MQ=255) tATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTcaca < 1:3571723/91‑1 (MQ=14) tATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCcaca > 1:621358/1‑91 (MQ=255) tATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCcaca < 2:3590599/91‑1 (MQ=255) aTCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCacac < 1:3398957/91‑1 (MQ=255) tCCATGAATGATTTATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACt > 2:2132856/1‑91 (MQ=255) tCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACt < 2:3746455/91‑1 (MQ=255) ccATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTc < 1:1824863/91‑1 (MQ=255) gaatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGATAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCttt > 1:3868951/1‑91 (MQ=255) gaatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCttt > 2:2363890/1‑91 (MQ=255) aatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCtttt > 1:3803276/1‑91 (MQ=255) atgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCcac > 1:2310612/1‑81 (MQ=255) atgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCcac < 2:2310612/81‑1 (MQ=255) atgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCttttt > 2:662155/1‑91 (MQ=255) gaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttga < 1:1065641/91‑1 (MQ=255) gaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttga < 1:614109/91‑1 (MQ=255) aTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgat > 2:1641423/1‑91 (MQ=255) aTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgat < 1:2646717/91‑1 (MQ=255) aTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgat < 2:62693/91‑1 (MQ=255) ttAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgatt > 2:2015534/1‑91 (MQ=255) ttAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTATGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgatt > 1:3275594/1‑91 (MQ=255) taataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttg < 2:2355851/87‑1 (MQ=255) aataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgattga > 1:2443889/1‑91 (MQ=255) ataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATATTA‑‑TTCATTTCTGCCACACTCCTTTttgattgta > 2:1437162/1‑89 (MQ=255) ataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGaa < 2:2877971/91‑1 (MQ=255) ataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGaa < 1:1576720/91‑1 (MQ=255) taaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAAtttt < 2:707362/52‑1 (MQ=255) aacaacAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAAtt > 2:2236100/1‑91 (MQ=255) aacaacAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAAtt > 1:1295121/1‑91 (MQ=255) caacaaAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAg > 1:249255/1‑91 (MQ=255) aacaaAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGc < 2:2826343/91‑1 (MQ=255) aacaaAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGc < 1:1954382/91‑1 (MQ=255) acaaAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCa > 2:210698/1‑91 (MQ=255) acaaAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCa < 1:1756670/91‑1 (MQ=255) aaaaaGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCAtt < 2:1533432/91‑1 (MQ=255) aaaaGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCAttt < 1:2850817/91‑1 (MQ=255) aGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTTTTTTTATTAGCATTTTAc > 2:3069897/1‑91 (MQ=255) aGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTAc < 2:1769753/91‑1 (MQ=255) aGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTAc < 1:1071285/91‑1 (MQ=255) tGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACCCCTTTTTGATTGAATTAGCATTTTACGATc < 2:1558371/91‑1 (MQ=255) ggggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCa > 1:951838/1‑91 (MQ=255) gggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCAt < 2:1393197/91‑1 (MQ=255) ggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATa < 2:478048/91‑1 (MQ=255) cAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATaaa < 2:3474697/91‑1 (MQ=255) cAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATaaa < 1:1118178/91‑1 (MQ=255) cAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATaaa > 1:1693782/1‑91 (MQ=255) cAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATaaa < 2:1269881/91‑1 (MQ=255) ttAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTc < 2:1441887/91‑1 (MQ=255) ttAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTc < 2:3711233/91‑1 (MQ=255) aGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATaa < 1:1359074/83‑1 (MQ=255) aGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAt < 2:2410400/91‑1 (MQ=255) aGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAt > 2:409189/1‑91 (MQ=255) aGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAt > 1:2365357/1‑91 (MQ=255) ggAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAtt > 1:3503289/1‑91 (MQ=255) gAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATta > 1:1457310/1‑91 (MQ=255) gAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATta < 2:856237/91‑1 (MQ=255) aGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATtat > 2:3875848/1‑91 (MQ=255) gtgtgtCAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATtata < 2:3573350/91‑1 (MQ=255) tgtgACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACGCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATaa > 2:2991847/1‑91 (MQ=255) gtggcAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAAt > 1:2888936/5‑91 (MQ=14) gtgACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAAt < 2:3402453/91‑1 (MQ=255) tggcAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAAtt > 1:946100/4‑91 (MQ=17) gACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTg < 2:369003/91‑1 (MQ=255) cAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAg < 1:861489/91‑1 (MQ=255) cAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAg < 2:1734138/91‑1 (MQ=255) cAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAg > 2:604640/1‑91 (MQ=18) cAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAg > 2:3037164/1‑91 (MQ=21) gaTGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGtttt > 2:2046394/1‑88 (MQ=255) gaTGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTAtt > 1:1182461/1‑91 (MQ=255) tGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTg > 2:36355/1‑91 (MQ=255) aaaTTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGaa < 2:2863315/91‑1 (MQ=255) aaaTTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGaa > 1:2562273/1‑91 (MQ=255) aattttATAAAAATTTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGaa > 1:2786620/3‑91 (MQ=25) aTTTTTATAAAA‑‑TTCATTTCTGCCACACTCCGTTTTGATTGAATGAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACa < 1:3099285/91‑1 (MQ=255) tttttATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACAt > 1:3007080/1‑91 (MQ=255) tttttATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACAt > 1:144697/1‑91 (MQ=255) ttttATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATa > 2:1079356/1‑91 (MQ=255) ttATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATaaa < 1:1641423/91‑1 (MQ=255) | TAAAGGCAAAATTGGAGCAGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAA > USA300TCH1516_ALE/770781‑770960 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |