| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 770,888 | C→T | 6.3% | intergenic (+74/‑176) | ybaK → / → glcR | Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase YbaK/HTH‑type transcriptional repressor GlcR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 770,888 | 0 | C | T | 6.3% | 781.9 / 24.3 | 235 | intergenic (+74/‑176) | ybaK/glcR | Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase YbaK/HTH‑type transcriptional repressor GlcR |
| Reads supporting (aligned to +/- strand): ref base C (105/115); new base T (10/5); total (115/120) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.88e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
Only 100 of 238 total aligned reads displayed.
AGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATGTAATTTTATCGTCA > USA300TCH1516_ALE/770799‑770978 | aGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGcc < 2:2740997/91‑1 (MQ=255) gTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCca < 2:398888/91‑1 (MQ=255) ttATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCcac < 2:3872570/91‑1 (MQ=255) ttATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCcac > 2:1612294/1‑91 (MQ=255) ttATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCcac < 1:242860/91‑1 (MQ=255) tATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTcaca < 1:3571723/91‑1 (MQ=14) tATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTcaca < 1:2057318/91‑1 (MQ=17) aTCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCacac < 2:2062024/91‑1 (MQ=255) aTCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCacac < 1:2306590/91‑1 (MQ=255) tCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACt < 2:3746455/91‑1 (MQ=255) tCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACt < 1:3113137/91‑1 (MQ=255) ccATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTATGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTc < 2:1425979/91‑1 (MQ=255) ccATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTc < 2:3450600/91‑1 (MQ=14) ccATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTc < 1:1824883/91‑1 (MQ=255) ccATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTc < 1:836085/91‑1 (MQ=255) atgaatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCt < 2:2117609/91‑1 (MQ=255) gaatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCttt > 2:2363890/1‑91 (MQ=255) gaatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCttt > 1:936538/1‑91 (MQ=255) aatgaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCtttt > 1:3803276/1‑91 (MQ=255) gaTTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttga < 1:1065641/91‑1 (MQ=255) taataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgattg > 2:2668342/1‑91 (MQ=255) taataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgattg > 2:19544/1‑91 (MQ=255) taataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttgattg > 1:3186472/1‑91 (MQ=255) taataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTttg < 2:2355851/87‑1 (MQ=255) ataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAGAT‑‑TTCATTTCTGCCACACTCCTTTTTGATTGaa < 2:2876691/91‑1 (MQ=255) ataaCAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGaa < 1:1576720/91‑1 (MQ=255) aacaacaacAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAAtt > 1:1634004/1‑91 (MQ=255) caacaaAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAg < 1:620742/91‑1 (MQ=255) caacaaAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAg < 1:3312877/91‑1 (MQ=255) aacaaAAAGTATGGGGCAAGATTAGGAGTGTGGCAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGc < 2:2826343/91‑1 (MQ=255) aacaaAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGc < 1:1954382/91‑1 (MQ=255) aaaaGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCAttt < 1:2850817/91‑1 (MQ=255) aGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTTTTTTTATTAGCATTTTAc > 2:3069897/1‑91 (MQ=255) aGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTAc > 2:1534218/1‑91 (MQ=255) aGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTAc < 1:1071285/91‑1 (MQ=255) aTGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGAt > 1:2512506/1‑91 (MQ=255) tGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATc < 2:1822485/91‑1 (MQ=255) tGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATc < 2:2921897/91‑1 (MQ=255) tGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACCCCTTTTTGATTGAATTAGCATTTTACGATc < 2:1559250/91‑1 (MQ=255) ggggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCa > 2:1668204/1‑91 (MQ=255) ggggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCa > 1:951838/1‑91 (MQ=255) ggggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCa > 2:1047619/1‑91 (MQ=255) gggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCAt < 2:657186/91‑1 (MQ=255) gggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCAt < 2:1393197/91‑1 (MQ=255) ggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATa < 2:2148640/91‑1 (MQ=255) ggCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATa < 1:1104513/91‑1 (MQ=255) cAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATaaa < 2:51549/91‑1 (MQ=255) ttAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTc < 2:3711233/91‑1 (MQ=255) ttAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTc > 2:3589922/1‑91 (MQ=255) ttAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGAACATAAACAGTc > 1:3510308/1‑91 (MQ=255) aGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTTTTTTTATTAGCATTTTACGATCATAAACAGTCAt > 2:909854/1‑91 (MQ=255) aGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAt < 2:1260239/91‑1 (MQ=255) aGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAt < 2:2410400/91‑1 (MQ=255) aGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAt > 2:409189/1‑91 (MQ=255) aGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAt > 2:677235/1‑91 (MQ=255) aGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCAt > 1:2365373/1‑91 (MQ=255) gAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATta > 1:1454316/1‑91 (MQ=255) aGTGTGGCAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTCCTTTTTGATTGTATTAGCATTTTACGATCATAAACAGTCATtat > 2:2293872/1‑91 (MQ=14) aGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATtat < 2:1732009/91‑1 (MQ=255) tgtgACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATaa < 2:2456269/91‑1 (MQ=255) gtggcAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAAt > 1:2888936/5‑91 (MQ=14) gtgACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAAt < 2:3402453/91‑1 (MQ=255) ggcAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTg > 2:2321562/3‑91 (MQ=17) gACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTg < 2:369003/91‑1 (MQ=255) cAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAg < 1:861489/91‑1 (MQ=255) cAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGGCATTATAATTGAg > 1:1757239/1‑91 (MQ=255) cAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAg > 2:604640/1‑91 (MQ=18) cAGAAATGAATTTTATAAAAAT‑‑TTCATCTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAg > 2:3037331/1‑91 (MQ=21) agagATGAAATTTTTATAAAA‑‑TTCATTTCTGCCCCACACCTTTTTGCTTGAATTAGCATCTTACGATCATAAACAGTCATTATAATTGAGt > 1:3093321/1‑91 (MQ=255) agagATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGt < 1:1298986/91‑1 (MQ=255) agaaaTGAATTTTATAAAAAT‑‑TTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGt > 2:3535043/5‑91 (MQ=21) agaTGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTAt > 2:3308908/1‑91 (MQ=255) gaTGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTAtt > 1:1182461/1‑91 (MQ=255) tGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTg > 2:36355/1‑91 (MQ=255) aaaTTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGaa > 2:80216/1‑91 (MQ=255) aaaTTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGaa < 2:2862882/91‑1 (MQ=255) aaaTTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGaa < 1:470648/91‑1 (MQ=255) aaaTTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGaa > 1:2562273/1‑91 (MQ=255) aattttATAAAAATTTCATCTCTGTCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGaa > 1:2786620/3‑91 (MQ=25) tttttATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACAt > 1:144697/1‑91 (MQ=255) tttttATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACAt < 1:2668342/91‑1 (MQ=255) ttttATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATa > 2:1079356/1‑91 (MQ=255) ttATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATaaa < 1:346043/91‑1 (MQ=255) ttATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATaaa < 1:1737600/91‑1 (MQ=255) ataAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATaaaaa > 1:247187/1‑91 (MQ=255) taAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAAt < 1:208215/91‑1 (MQ=255) aaaa‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATg < 2:1119650/91‑1 (MQ=255) a‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATGTaa > 1:1274769/1‑91 (MQ=255) a‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATGTaa > 2:2083937/1‑91 (MQ=255) ttCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATGTAAt < 2:950016/91‑1 (MQ=255) tCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATGTAAtt < 1:569473/91‑1 (MQ=255) tCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATGTAAtt > 1:2921497/1‑91 (MQ=255) aTTTCTGCCACACTCCTTTTTTTTTGTTTTTTCATTTTACGATCATAAACATTCATTATAATTGAGTATTTGAACATAAAAATGTAAtttt > 2:278875/1‑91 (MQ=255) ttCTGCCACACTCCTTTTTGCTTGAATTAGCATTTTACGATCATAAACAGTCATAATAATTGAGTATTTGAACATAAAAATGTAATTTTac > 2:3835593/1‑90 (MQ=255) ttCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATGTAATTTTAt > 1:164572/1‑91 (MQ=255) tCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATGTAATTTTATc > 2:3515779/1‑91 (MQ=255) tCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATGTAATTTTATc < 2:1462310/91‑1 (MQ=255) cTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATGTAATTTTATCg < 2:2562273/91‑1 (MQ=255) gCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATGTAATTTTATCGTc > 2:3035904/1‑91 (MQ=255) gCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATGTAATTTTATCGTc < 1:2344669/91‑1 (MQ=255) | AGTTATCCATGAATGATTAATAACAACAAAAAGTATGGGGCAAGATTAGGAGTGTGACAGAGATGAAATTTTTATAAAA‑‑TTCATTTCTGCCACACTCCTTTTTGATTGAATTAGCATTTTACGATCATAAACAGTCATTATAATTGAGTATTTGAACATAAAAATGTAATTTTATCGTCA > USA300TCH1516_ALE/770799‑770978 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |