| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 779,970 | G→A | 5.4% | intergenic (+26/+46) | csbB → / ← saeS | Putative glycosyltransferase CsbB/Histidine protein kinase SaeS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 779,970 | 0 | G | A | 5.4% | 781.0 / 18.5 | 238 | intergenic (+26/+46) | csbB/saeS | Putative glycosyltransferase CsbB/Histidine protein kinase SaeS |
| Reads supporting (aligned to +/- strand): ref base G (118/105); new base A (7/7); total (126/112) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 260 total aligned reads displayed.
AAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTAGT > USA300TCH1516_ALE/779880‑780060 | aGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATggg > 1:2933273/1‑91 (MQ=255) aGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATggg > 1:1499086/1‑91 (MQ=255) gCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGTCCTCATTAATGGGa < 1:2550226/91‑1 (MQ=255) gCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGa < 1:3140035/91‑1 (MQ=255) gCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGa > 1:1393527/1‑91 (MQ=255) tACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGc < 2:909772/91‑1 (MQ=255) cAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGctt > 2:552092/1‑91 (MQ=255) cAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGctt > 2:3513117/1‑91 (MQ=255) aaaTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGcttc > 1:1548197/1‑91 (MQ=255) aaTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGcttct > 2:43709/1‑91 (MQ=255) aaTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGcttct > 2:2530372/1‑91 (MQ=255) tCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCttt < 2:1499086/91‑1 (MQ=255) tCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCttt < 1:2464767/91‑1 (MQ=255) tCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCttt < 1:20526/91‑1 (MQ=255) tCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCttt < 1:2096834/91‑1 (MQ=255) cTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCtttt > 2:1922549/1‑91 (MQ=255) tttCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCTCCCATTAATGAGGGCTTCttttt < 1:3823267/91‑1 (MQ=37) ttCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTa > 2:846954/1‑91 (MQ=255) tCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAg > 1:3375898/1‑91 (MQ=255) tCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAg > 2:1637152/1‑91 (MQ=255) cAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATGCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGt > 2:2951490/1‑91 (MQ=255) aagacTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTc > 2:1833123/5‑91 (MQ=255) gTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCtt > 1:686556/1‑91 (MQ=255) gTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCtt > 1:2937289/1‑91 (MQ=255) tCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCttt < 2:1751153/91‑1 (MQ=255) cTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTg < 2:1199145/91‑1 (MQ=255) ttGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGc < 1:1889280/91‑1 (MQ=255) ttGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGc < 2:1029227/91‑1 (MQ=255) ttGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGc < 2:1875118/91‑1 (MQ=255) tGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCa < 2:1548197/91‑1 (MQ=255) tGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCa > 1:3421153/1‑91 (MQ=255) tGAAAATGATGAGAAGGATACCCATAAAGTTTATTATAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCa < 2:106423/91‑1 (MQ=255) gAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCat < 1:1319776/91‑1 (MQ=255) gAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCat < 1:1726858/91‑1 (MQ=255) gAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCat > 1:1878225/1‑91 (MQ=255) aaaTGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattt > 1:873402/1‑91 (MQ=255) atgatgAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatttta > 2:3064143/1‑91 (MQ=255) atgatgAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatttta > 2:965797/1‑91 (MQ=255) atgatgAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatttta > 1:2724983/1‑91 (MQ=255) atgatgAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatttta > 1:2902694/1‑91 (MQ=255) atgatgAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatttta < 1:3007132/91‑1 (MQ=255) atgatgAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatttta > 1:3323943/1‑91 (MQ=255) tgatgaGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCttttt < 2:2831335/75‑1 (MQ=255) atgaGAAGGATACCCATAAAGTTTATACTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttattt > 2:2218478/1‑91 (MQ=255) gagaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCAttttatttta < 1:122990/91‑1 (MQ=255) gagaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCAttttatttta < 1:2178652/91‑1 (MQ=255) gaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTtata > 1:27670/1‑91 (MQ=255) ggATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTataaat < 2:1984095/91‑1 (MQ=255) gATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTA‑TTTataaaata < 1:1864879/91‑4 (MQ=255) tACCCATAAAGTTTATTCGAAATAAGCAAAAAAAGAAGCCCTCATTAATGGGAGTTTCTGTTTAGTCTTTGCATTTTATTGTAtaaagaaa < 2:2418145/91‑1 (MQ=255) aCCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATaaataaat < 1:3064066/91‑1 (MQ=255) cccATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATc < 2:2683286/91‑1 (MQ=255) aaGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTa < 2:923621/91‑1 (MQ=255) aGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTAt < 1:835697/91‑1 (MQ=255) gTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATg > 2:3819541/1‑91 (MQ=255) gTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATg < 2:2166521/91‑1 (MQ=255) gTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATg > 2:2108866/1‑91 (MQ=255) aTTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGt < 2:3154204/91‑1 (MQ=255) cTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAAt < 1:2808079/91‑1 (MQ=255) aataaaCGAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTc < 1:1943599/91‑1 (MQ=255) aaaCAAAAAAAGAAGCTCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTaa > 2:1312132/1‑91 (MQ=255) aaaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTaa < 2:2326263/91‑1 (MQ=255) aCAAAAAAAGAAGCCCTCATTAATGGGAACTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAAtt < 2:2254518/91‑1 (MQ=255) cAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAAttt < 2:264752/91‑1 (MQ=255) aaaaaaGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTtgt < 2:3511659/91‑1 (MQ=255) aaaaaaGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTtgt > 1:3567349/1‑91 (MQ=255) aaaaaaGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTtgt > 1:413642/1‑91 (MQ=255) aaaaaGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTtgtg > 2:2475591/1‑91 (MQ=255) aaaaGAAGCTCCCATTAATGAGGGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTgtgt > 2:3298841/1‑91 (MQ=37) aagaagCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAAt > 2:2400889/1‑76 (MQ=255) agaagCTCCCATTAATGAGGGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAAt > 1:3764452/1‑91 (MQ=37) gaagCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATg > 1:2344717/1‑91 (MQ=255) gaagCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATg > 2:3125483/1‑91 (MQ=255) gaagCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATg < 2:2994325/91‑1 (MQ=255) aagCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGt < 1:10050/91‑1 (MQ=255) aagCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGt > 1:305601/1‑91 (MQ=255) aagCCCTCATTAATGGGAGCTTC‑TTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt < 2:243861/91‑1 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 2:111943/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 2:720222/1‑91 (MQ=255) cccTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTAc < 1:945748/91‑1 (MQ=255) ccTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACa > 1:640825/1‑91 (MQ=255) cccATTAATGAGGGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAg > 1:1163132/3‑91 (MQ=255) cATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTc < 2:1407907/91‑1 (MQ=255) cATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTc < 2:1776127/91‑1 (MQ=255) aTTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCa < 2:3039870/91‑1 (MQ=255) aTTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCa < 1:3681769/91‑1 (MQ=255) ttAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCAt > 1:3515351/1‑91 (MQ=255) ttAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCAt > 1:3514846/1‑91 (MQ=255) ttAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCAt < 1:2366981/91‑1 (MQ=255) tAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATc < 2:3682982/91‑1 (MQ=255) aaTGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCg > 1:1600611/1‑91 (MQ=255) aaTGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCg < 1:1082853/91‑1 (MQ=255) aaTGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTATAATGTTACAGTCATCg > 1:3326905/1‑91 (MQ=255) tGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTa < 1:1272010/91‑1 (MQ=255) gggAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTAg < 2:338465/91‑1 (MQ=255) gggAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTAg > 2:3183669/1‑91 (MQ=255) gggAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTAg < 1:3465202/91‑1 (MQ=255) gggAGCTTCTTTTTAGTCTTTGCATGTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTAg < 1:3629010/91‑1 (MQ=255) ggAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTAGt < 2:371959/91‑1 (MQ=255) ggAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTAGt > 2:818654/1‑91 (MQ=255) | AAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTAGT > USA300TCH1516_ALE/779880‑780060 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |