| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 895,932 | G→A | 9.7% | intergenic (+131/+12) | metQ_2 → / ← Int‑Tn_1 | Methionine‑binding lipoprotein MetQ/Transposase from transposon Tn916 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 895,932 | 0 | G | A | 9.7% | 706.5 / 45.6 | 236 | intergenic (+131/+12) | metQ_2/Int‑Tn_1 | Methionine‑binding lipoprotein MetQ/Transposase from transposon Tn916 |
| Reads supporting (aligned to +/- strand): ref base G (102/111); new base A (8/15); total (110/126) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.56e-01 | |||||||||||
Only 100 of 240 total aligned reads displayed.
GGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAGT > USA300TCH1516_ALE/895842‑896022 | ggggTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAg > 1:3434412/1‑91 (MQ=255)ggggTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAg > 1:1621096/1‑91 (MQ=255) gggtATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATAGAATTTT‑AAACAAAAAAATACGCTGAGAt > 2:2028927/4‑91 (MQ=255) ggTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACGAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAAAt < 2:3829970/91‑1 (MQ=255) tttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAgcg > 2:3178598/1‑91 (MQ=255) tttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAAATCTGAgcg < 2:1170005/91‑1 (MQ=255) ttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAgcgc < 1:2179962/91‑1 (MQ=255) ttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAAATCTGAgcgt < 1:1049143/91‑2 (MQ=255) tgtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCa < 2:2865614/91‑1 (MQ=255) tgtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCa > 1:1785175/1‑91 (MQ=255) tgtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAAATCTGAgcgta < 2:192603/91‑3 (MQ=255) gtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCAt > 1:431205/1‑91 (MQ=255) gtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCAt > 1:948098/1‑91 (MQ=255) gtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCAt > 2:2732428/1‑91 (MQ=255) gtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCAt > 1:1924045/1‑91 (MQ=255) tgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCAtt > 1:2133446/1‑91 (MQ=255) ggTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAAACAAAAAAATACGCTCAGATTTGAGCGCAtt < 2:587601/91‑1 (MQ=255) aTTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATcc < 2:3439236/91‑1 (MQ=255) tGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCaa > 2:1705715/1‑91 (MQ=255) tGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCaa < 2:1491844/91‑1 (MQ=255) aaaaTAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGt < 1:2248222/91‑1 (MQ=255) aaaTAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGtt > 1:612378/1‑91 (MQ=255) aTAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGtttt > 1:1279729/1‑91 (MQ=255) tAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTa < 2:3790755/91‑1 (MQ=255) aaaaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTa < 2:147098/90‑1 (MQ=255) aaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTAcc > 2:672989/1‑91 (MQ=255) aaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTAcc < 2:3696273/91‑1 (MQ=255) aaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTAcc > 1:1685076/1‑91 (MQ=255) aaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTAcc > 2:2261184/1‑91 (MQ=255) aaaTGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTg < 1:3026327/91‑1 (MQ=255) aaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTg < 1:1395452/91‑1 (MQ=255) aaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGt > 1:225290/1‑91 (MQ=255) aaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGt > 2:3350695/1‑91 (MQ=255) gggCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTc > 1:1509799/1‑91 (MQ=255) ggCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCa < 1:2623031/91‑1 (MQ=255) acaAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGt > 1:963136/1‑91 (MQ=255) caAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGtt > 1:813876/1‑91 (MQ=255) caAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGtt > 2:304237/1‑91 (MQ=255) aaaGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACTCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTg > 1:3089258/1‑91 (MQ=255) aaaGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTg < 1:1717245/91‑1 (MQ=255) aaaGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTg > 1:2848903/1‑91 (MQ=255) aGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGtt < 2:428848/91‑1 (MQ=255) ggggCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtc < 2:3527559/91‑1 (MQ=255) ggggCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtc < 1:3475163/91‑1 (MQ=255) ggggCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtc < 2:456275/91‑1 (MQ=255) gggCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtca > 1:3686928/1‑91 (MQ=255) gCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcatc > 1:3537494/1‑91 (MQ=255) gCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcatc > 1:1688018/1‑91 (MQ=255) cAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcatca > 1:1000500/1‑91 (MQ=255) aGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGTGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTcatcat > 2:3265263/1‑91 (MQ=255) aGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTAt < 1:797367/59‑1 (MQ=255) aGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTAt > 2:797367/1‑59 (MQ=255) aGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTcatcat > 1:1082078/1‑91 (MQ=255) atatGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATc < 2:3490928/91‑1 (MQ=255) tGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCtt < 2:1452315/91‑1 (MQ=255) tGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCtt > 2:1591239/1‑91 (MQ=255) gCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTa < 1:3699891/91‑1 (MQ=255) gCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTa > 2:890717/1‑91 (MQ=255) cAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTAt > 2:2227912/1‑91 (MQ=255) cAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTAt < 2:563521/91‑1 (MQ=255) cAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTAt < 2:742873/91‑1 (MQ=255) cAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTAt < 2:3667402/91‑1 (MQ=255) aaTTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATcc < 1:3173423/91‑1 (MQ=255) aTTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCa > 1:199179/1‑91 (MQ=255) aTCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCt < 1:672989/91‑1 (MQ=255) tCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTg < 1:667607/91‑1 (MQ=255) tCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTg < 2:2133446/91‑1 (MQ=255) tCGAAGTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTg < 2:3148538/91‑1 (MQ=255) cGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGt > 1:2035730/1‑91 (MQ=255) cGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGt < 2:372277/91‑1 (MQ=255) gAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGtt > 2:2060299/1‑91 (MQ=255) tttt‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAg < 1:1886966/91‑1 (MQ=255) ttt‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGt < 2:3879733/91‑1 (MQ=255) ttt‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGt < 1:487194/91‑1 (MQ=255) t‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTaa < 2:1722281/91‑1 (MQ=255) t‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTaa < 2:1255465/91‑1 (MQ=255) t‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTaa < 2:1779734/91‑1 (MQ=255) cAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATGCTTATCCATCTGTTCAGTAACGTg > 2:3616405/1‑91 (MQ=255) cAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTg > 1:144183/1‑91 (MQ=255) aaaaaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTga < 1:1213671/91‑1 (MQ=255) aaaaaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTga > 1:696639/1‑91 (MQ=255) aaaaaaTACGCTCAGATTTGAGCGCATTATCCAAGCTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTgtg < 1:3735947/91‑3 (MQ=255) aaaaaaTACGCCCAGATTTGCGCGCATTATCCACGTTTTACCTGTTCAAGTTTGCACATCCTATCCTCATCCCTCTGTTCCGTGACGTgcg > 2:1803008/1‑89 (MQ=255) taaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTgaga > 1:2492046/2‑91 (MQ=255) aaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAAt > 2:1598997/1‑91 (MQ=255) tgcGCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATaaa > 2:2312475/3‑91 (MQ=255) tACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATaaa < 1:1144589/91‑1 (MQ=255) tACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATaaa < 2:714681/91‑1 (MQ=255) gcGCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAAt > 1:1743596/2‑91 (MQ=255) gcGCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAAt > 1:2393864/2‑91 (MQ=255) aCGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGACAATAAAt > 1:1930529/1‑91 (MQ=255) cGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg > 1:16933/1‑91 (MQ=255) cGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg < 2:1839692/91‑1 (MQ=255) gCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATgg < 2:2991523/91‑1 (MQ=255) gCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATgg < 2:2522553/91‑1 (MQ=255) cTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGa > 1:2748686/1‑91 (MQ=255) cTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGa < 1:2275032/91‑1 (MQ=255) tCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTATTCAGTAACGTGAGAATAAATGGaa > 1:3600613/1‑91 (MQ=255) aGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAg < 1:2787237/91‑1 (MQ=255) aGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAg < 1:2677189/91‑1 (MQ=255) | GGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAGT > USA300TCH1516_ALE/895842‑896022 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |