| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 895,935 | T→C | 9.4% | intergenic (+134/+9) | metQ_2 → / ← Int‑Tn_1 | Methionine‑binding lipoprotein MetQ/Transposase from transposon Tn916 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 895,935 | 0 | T | C | 9.4% | 675.7 / 48.3 | 234 | intergenic (+134/+9) | metQ_2/Int‑Tn_1 | Methionine‑binding lipoprotein MetQ/Transposase from transposon Tn916 |
| Reads supporting (aligned to +/- strand): ref base T (100/112); new base C (8/14); total (108/126) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.19e-01 | |||||||||||
Only 100 of 235 total aligned reads displayed.
ATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAGTGTT > USA300TCH1516_ALE/895848‑896025 | tttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAgcg > 2:3473444/1‑91 (MQ=255) tttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAAATCTGAgcg < 2:1170005/91‑1 (MQ=255) ttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAgcgc < 1:2180199/91‑1 (MQ=255) ttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAgcgc > 2:3566182/1‑91 (MQ=255) ttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAAATCTGAgcgt < 1:1049143/91‑2 (MQ=255) tgtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCa > 2:3296505/1‑91 (MQ=255) tgtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCa > 1:1785175/1‑91 (MQ=255) gtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCAt > 1:948098/1‑91 (MQ=255) tgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAAATCTGAGCGTAtt < 2:491481/91‑1 (MQ=255) ggTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAAACAAAAAAATACGCTCAGATTTGAGCGCAtt < 2:587601/91‑1 (MQ=255) ggTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATGCGCTCAAATCTGAGCGTAttt < 1:2253193/91‑2 (MQ=38) aTTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATcc > 1:1466577/1‑91 (MQ=255) tGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCaa < 2:1491844/91‑1 (MQ=255) tGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCaa > 2:1705560/1‑91 (MQ=255) aaaaTAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGt < 1:2248712/91‑1 (MQ=255) aaaTAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGtt > 1:612378/1‑91 (MQ=255) aaaTAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGtt > 1:2016109/1‑91 (MQ=255) aaTAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATAAA‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGttt < 2:2888561/91‑1 (MQ=255) aTAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGtttt > 1:1279350/1‑91 (MQ=255) aTAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGtttt < 2:2019759/91‑1 (MQ=255) tAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTa < 2:3790755/91‑1 (MQ=255) aaaaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTa < 2:147098/90‑1 (MQ=255) aaaaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTa < 2:2095311/90‑1 (MQ=255) aaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTAcc > 1:1685076/1‑91 (MQ=255) aaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTAcc > 1:3502632/1‑91 (MQ=255) aaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTAcc > 1:3696273/1‑91 (MQ=255) aaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTAcc > 2:672989/1‑91 (MQ=255) aaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTAcc > 2:2261184/1‑91 (MQ=255) aaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCt < 2:2699358/91‑1 (MQ=255) aaaTGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTg < 1:3026327/91‑1 (MQ=255) aaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTg < 2:3514582/91‑1 (MQ=255) aaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTg < 1:1395452/91‑1 (MQ=255) aaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGt < 2:341074/91‑1 (MQ=255) aaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGt < 1:2175585/91‑1 (MQ=255) ggCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCa < 1:2623031/91‑1 (MQ=255) ggCACAAAAGGGGCAGTATATGCAAATTATCGAATAAT‑AAAAAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCa < 2:2751564/91‑1 (MQ=255) cacaAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAg > 2:1015664/1‑91 (MQ=255) caAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGtt > 1:813876/1‑91 (MQ=255) caAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGtt < 1:2053732/91‑1 (MQ=255) aaaGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACTCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTg > 1:3089258/1‑91 (MQ=255) aaaGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTg < 1:1717245/91‑1 (MQ=255) aGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGtt < 2:429009/91‑1 (MQ=255) aGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGtt < 2:428673/91‑1 (MQ=255) ggggCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtc < 1:3728841/91‑1 (MQ=255) gCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcatc > 1:1688018/1‑91 (MQ=255) cAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcatca > 1:1000500/1‑91 (MQ=255) aGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTAt > 2:797367/1‑59 (MQ=255) aGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTAt < 1:799249/59‑1 (MQ=255) aGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTcatcat > 1:1082078/1‑91 (MQ=255) aGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTAGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTcatcat > 1:514476/1‑91 (MQ=255) atatGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATc < 2:3703005/91‑1 (MQ=255) tatGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATcc < 1:1975581/91‑1 (MQ=255) tGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCtt < 2:1452315/91‑1 (MQ=255) gCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTa > 2:890717/1‑91 (MQ=255) cAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTAt < 2:742873/91‑1 (MQ=255) cAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTAt < 2:563521/91‑1 (MQ=255) cAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTAt < 2:3667402/91‑1 (MQ=255) cAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTAt > 2:2227912/1‑91 (MQ=255) aaTTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATcc < 1:482609/91‑1 (MQ=255) aaTTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATcc < 1:3173423/91‑1 (MQ=255) aTCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCt < 2:306637/91‑1 (MQ=255) tCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTg < 2:2133446/91‑1 (MQ=255) gAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGtt > 2:3860144/1‑91 (MQ=255) gAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGtt > 2:249310/1‑91 (MQ=255) aaTTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTc < 1:2678073/91‑1 (MQ=255) aTTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCa < 2:366051/91‑1 (MQ=255) tttt‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAg < 1:1886966/91‑1 (MQ=255) t‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTaa < 2:1779734/91‑1 (MQ=255) t‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTaa < 2:1255465/91‑1 (MQ=255) t‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTaa < 2:1722281/91‑1 (MQ=255) aaaCAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAAc > 2:3769039/1‑91 (MQ=255) aCAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGt > 2:3159207/1‑91 (MQ=255) cAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTg > 1:144183/1‑91 (MQ=255) aaaaaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTga < 1:1213671/91‑1 (MQ=255) aaaaaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTga > 1:696639/1‑91 (MQ=255) aaaaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTgag > 2:1802951/1‑91 (MQ=255) aaaaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTgag < 1:1629629/91‑1 (MQ=255) taaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTgaga > 1:2492046/2‑91 (MQ=255) aaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAAt > 2:1910498/1‑91 (MQ=255) aaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAAt > 2:1598997/1‑91 (MQ=255) atgcGCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATaa > 1:669719/4‑91 (MQ=255) tgcGCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATaaa > 2:2312475/3‑91 (MQ=255) tACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATaaa < 2:714681/91‑1 (MQ=255) tACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATaaa < 1:3435180/91‑1 (MQ=255) tACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATaaa < 1:170477/91‑1 (MQ=255) tACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATaaa < 1:1144589/91‑1 (MQ=255) gcGCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAAt > 1:1743596/2‑91 (MQ=255) gcGCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAAt > 1:2393864/2‑91 (MQ=255) cGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg < 2:1839692/91‑1 (MQ=255) cGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg > 2:324427/1‑91 (MQ=255) cGCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg > 1:3796966/1‑91 (MQ=255) cGCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg > 1:1925908/1‑91 (MQ=255) gCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATgg < 2:2991562/91‑1 (MQ=255) cTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGa < 1:2275032/91‑1 (MQ=255) cTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGa > 1:2748686/1‑91 (MQ=255) tCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGaa > 1:362673/1‑91 (MQ=255) tCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGaa < 1:67949/91‑1 (MQ=255) aGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAg < 1:2787237/91‑1 (MQ=255) aGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAg < 1:2858962/91‑1 (MQ=255) gATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAgt < 1:3545211/91‑1 (MQ=255) | ATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTT‑AAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAGTGTT > USA300TCH1516_ALE/895848‑896025 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |