| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 917,327 | T→G | 7.6% | intergenic (+86/+244) | sufB_2 → / ← USA300HOU_RS04545 | FeS cluster assembly protein SufB/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 917,327 | 0 | T | G | 7.6% | 734.7 / 37.2 | 227 | intergenic (+86/+244) | sufB_2/USA300HOU_RS04545 | FeS cluster assembly protein SufB/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (113/96); new base G (5/13); total (118/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.72e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
Only 100 of 235 total aligned reads displayed.
ATAGCTTTAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGGTGTAA > USA300TCH1516_ALE/917238‑917417 | aTAGCTTTAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACAtt > 1:1813480/1‑91 (MQ=255) gCTTTAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACt < 2:1754664/91‑1 (MQ=255) cTTTAAGCCGCGTTGTTAAGCCATTATTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAGC‑‑AAACAGCCACAGTAAtg < 2:942181/91‑1 (MQ=255) cTTTAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACtg > 2:1072647/1‑91 (MQ=255) cTTTAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACtg > 1:1493953/1‑91 (MQ=255) cTTTAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACtg > 2:2484610/1‑91 (MQ=255) ttAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACtgtg > 1:3383141/1‑91 (MQ=255) ttAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTAATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACAt > 1:3072817/1‑84 (MQ=255) tAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACAGTAATGTgg < 1:1338316/91‑1 (MQ=255) tAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACAGTAATGTgg < 1:204270/91‑1 (MQ=255) aaaCCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGc > 2:1482913/1‑91 (MQ=255) aaaCCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGc > 1:1526021/1‑91 (MQ=255) aaaCCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACAGTAATGTGGc < 1:2513532/91‑1 (MQ=255) aaCCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCt < 1:298846/91‑1 (MQ=255) aaCCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCt < 1:3440632/91‑1 (MQ=255) aaCCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCt > 1:1991727/1‑91 (MQ=255) aaCCGCGTGGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCt < 2:3593369/91‑1 (MQ=255) ccGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCttt > 1:2605748/1‑91 (MQ=255) cgcgTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACAGTAATGTGGCtttt < 2:1330511/91‑1 (MQ=255) gcgTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCttttt < 1:569872/91‑1 (MQ=255) gcgTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCttttt < 1:3815239/91‑1 (MQ=255) gcgTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCttttt > 1:1355664/1‑91 (MQ=255) gcgTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCttttt < 1:1860899/91‑1 (MQ=255) gcgTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCttttt > 2:2825712/1‑91 (MQ=255) gcgTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCttttt > 2:2917063/1‑91 (MQ=255) gttAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAACAAAAAAAGCCACAGTAATGTGGCtttttgtt < 2:1520270/91‑4 (MQ=25) gttAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGtt > 2:2725187/1‑91 (MQ=255) gttAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGtt > 2:1126008/1‑91 (MQ=255) gatAAGCCATTCTTGACTGCCGAAAATGGCTATTGATACCATTTTGCTACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGtt > 2:1385073/3‑91 (MQ=255) ttAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCATATTACTGTGGCTTTTTTTGttt > 2:3120305/1‑91 (MQ=255) ttAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGttt > 1:741574/1‑91 (MQ=255) ttAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGttt > 2:2121106/1‑91 (MQ=255) ttAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGATTTTTTTGttt > 1:3515282/1‑91 (MQ=255) aaGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTta > 1:1134059/1‑91 (MQ=255) cATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAAc < 1:2423510/91‑1 (MQ=255) tCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTaa > 2:3679735/1‑91 (MQ=255) cTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTaaa < 1:3056915/91‑1 (MQ=255) ttGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAAt > 1:3031916/1‑91 (MQ=255) ttGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAAt < 1:3754082/91‑1 (MQ=255) ttGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAAt > 2:1024747/1‑91 (MQ=255) ccGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTg < 2:1439562/91‑1 (MQ=255) cGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTga > 1:2324081/1‑91 (MQ=255) gAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTgat < 1:918592/91‑1 (MQ=255) aaaTGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATGACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTgatag < 1:3363124/91‑1 (MQ=255) aaTGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTgataga < 1:3252609/91‑1 (MQ=255) aaTGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTgataga < 2:621788/91‑1 (MQ=255) ggCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATaa > 2:3642538/1‑91 (MQ=255) ggCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATaa < 2:3263591/91‑1 (MQ=255) gCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAg < 1:120545/91‑1 (MQ=255) cTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGc < 1:1473062/91‑1 (MQ=255) tATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCt > 2:1869504/1‑91 (MQ=255) aTTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCtt > 2:1909218/1‑91 (MQ=255) aTTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCtt < 1:1011823/91‑1 (MQ=255) aTTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCtt > 1:3832776/1‑91 (MQ=255) aTTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCtt < 2:1665057/91‑1 (MQ=255) aTTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCtt > 2:3134501/1‑91 (MQ=255) aTTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCtt > 2:2608011/1‑91 (MQ=255) ttGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCttt > 2:18637/1‑91 (MQ=255) tGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTg < 1:3783047/91‑1 (MQ=255) gATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGt > 2:2365291/1‑91 (MQ=255) aTACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTa < 2:2997839/91‑1 (MQ=255) tACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTAc > 1:2283391/1‑91 (MQ=255) aCCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACt < 1:74845/91‑1 (MQ=255) aCCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACt < 1:824385/91‑1 (MQ=255) aCCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACt < 1:1964012/91‑1 (MQ=255) aCCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACt < 1:2079731/91‑1 (MQ=255) cATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACtta > 1:517442/1‑91 (MQ=255) aTTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACttat > 2:3227208/1‑91 (MQ=255) aTTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACttat > 2:2529694/1‑91 (MQ=255) tttGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACttattt > 1:2820427/1‑91 (MQ=255) ttGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACttattta > 2:2281377/1‑91 (MQ=255) tGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACttatttat > 2:1809251/1‑91 (MQ=255) gATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTtata > 2:685711/1‑91 (MQ=255) gATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTtata > 2:546454/1‑91 (MQ=255) tACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATc < 2:3336506/91‑1 (MQ=255) tGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGt > 1:2553580/1‑91 (MQ=255) tGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGt < 1:2671788/91‑1 (MQ=255) tGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGt < 2:885401/91‑1 (MQ=255) tataAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGa < 1:2140592/91‑1 (MQ=255) taAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAtt < 1:2261134/91‑1 (MQ=255) taAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAtt < 1:858036/91‑1 (MQ=255) taAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAtt < 2:2769601/91‑1 (MQ=255) c‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAttttt < 2:2312594/91‑1 (MQ=255) c‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGAttttt < 2:2051420/91‑1 (MQ=255) aaaaaGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAg < 2:2029292/80‑1 (MQ=255) aaaaaGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGActtttt > 1:3616843/1‑91 (MQ=255) aaaaGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTg > 1:1300056/1‑91 (MQ=255) aaGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGAt > 1:1689565/1‑91 (MQ=255) aGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGAtt < 1:2127827/91‑1 (MQ=255) gCCACAGTAATGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATGTATATAAGTTCGATTTTTTGATTg > 2:1063723/1‑91 (MQ=255) cacaTTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATCGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTTATTGgt > 2:480262/1‑91 (MQ=255) cacaTTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGgt > 1:387299/1‑91 (MQ=255) cacaTTACTGTCGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACCTATTTATATCAGCTCTCCTTTttggttggc > 2:480431/1‑90 (MQ=255) cacaTAACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTATGAACTTATTTATATCCGTTCGATTTTTTGATCGgt > 2:3507095/1‑91 (MQ=255) acaTTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGgtg > 1:41025/1‑91 (MQ=255) acaTTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGgtg < 1:2061111/91‑1 (MQ=255) acaTTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGgtg > 1:2599875/1‑91 (MQ=255) caTTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGgtgt > 2:2943110/1‑91 (MQ=255) aTTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGGTGTa < 1:2808957/91‑1 (MQ=255) aTTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGGTGTa < 1:1072647/91‑1 (MQ=255) | ATAGCTTTAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAAC‑‑AAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGGTGTAA > USA300TCH1516_ALE/917238‑917417 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |