| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,042,796 | G→A | 16.6% | intergenic (+26/+63) | tagE_3 → / ← catD | Poly(glycerol‑phosphate) alpha‑glucosyltransferase/Putative oxidoreductase CatD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,042,796 | 0 | G | A | 16.6% | 587.0 / 89.9 | 239 | intergenic (+26/+63) | tagE_3/catD | Poly(glycerol‑phosphate) alpha‑glucosyltransferase/Putative oxidoreductase CatD |
| Reads supporting (aligned to +/- strand): ref base G (90/109); new base A (27/13); total (117/122) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.46e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
Only 100 of 242 total aligned reads displayed.
ACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAG > USA300TCH1516_ALE/1042706‑1042886 | aCATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAg < 2:421383/91‑1 (MQ=255) aTTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTa > 2:645199/1‑91 (MQ=255) ttATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAc < 1:2372371/91‑1 (MQ=255) ttATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAc > 2:248720/1‑91 (MQ=255) tataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAcc > 2:2736022/1‑91 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCt < 1:3884818/91‑1 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTa > 2:1616354/1‑91 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTa > 1:1551984/1‑91 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATActag < 2:78444/91‑4 (MQ=39) aGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAg < 2:2151177/91‑1 (MQ=255) aGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAg < 1:615977/91‑1 (MQ=255) aGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCTAg < 2:615626/91‑1 (MQ=255) gAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAgg < 1:2864901/91‑1 (MQ=255) gAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAgg < 2:1168808/91‑1 (MQ=255) aaaaaTATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCTAGGa < 2:447918/91‑1 (MQ=255) aaaTATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAtt < 2:3077509/91‑1 (MQ=255) atatTCAGCGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGTAAAAATCCTAGGTACTCATGAATACCTAGGAtttt < 1:1950384/91‑1 (MQ=25) atatTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGTAAAAATCCTAGGTACTCATGAATACCTAGGAtttt < 1:2104911/91‑1 (MQ=37) atatTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGTAAAAATCCTAGGTACTCATGAATACCTAGGAtttt < 1:3441917/91‑1 (MQ=37) tatTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAttttt < 2:718875/91‑1 (MQ=255) ttCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTAc > 2:2650335/1‑91 (MQ=255) cAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAttttttacg > 2:2050887/1‑87 (MQ=255) cAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGc > 1:2404764/1‑91 (MQ=255) cAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGc > 2:1270124/1‑91 (MQ=255) aaCGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCa < 1:349440/91‑1 (MQ=255) aaCGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCa < 1:1605978/91‑1 (MQ=255) aCGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCAt > 2:3737736/1‑91 (MQ=255) gAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGCTTTTTACGCATGAt > 1:1397446/1‑91 (MQ=255) aTCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATaa < 2:529864/91‑1 (MQ=255) cAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAt < 2:1744995/91‑1 (MQ=255) aaTATTAGAAAAATGGTTAACTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATa > 2:340490/1‑91 (MQ=255) aaTATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATa > 1:1095112/1‑91 (MQ=255) aaTATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATa < 1:2332036/91‑1 (MQ=255) tatTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACa > 1:55528/1‑91 (MQ=255) atTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaa > 2:3783462/1‑91 (MQ=255) atTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaa > 2:2571773/1‑91 (MQ=255) ttAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaa < 2:3516320/91‑1 (MQ=255) tAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaaa > 1:1132028/1‑91 (MQ=255) tAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAAGCCTAGGTATTCATGAGTACCTAGGATTTTTCCGCATGATAAATACaaaa > 2:1555206/1‑91 (MQ=255) aGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaaaa > 1:3773106/1‑91 (MQ=255) aGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaaaa > 1:2201821/1‑91 (MQ=255) aGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaaaa > 2:1926953/1‑91 (MQ=255) aGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaaaa < 1:2445197/91‑1 (MQ=255) aGAAAAATGGTGAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaaaa < 2:1875712/91‑1 (MQ=255) aaaaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAag < 1:630021/91‑1 (MQ=255) aaaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAaga > 2:2259433/1‑91 (MQ=255) aaaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAaga > 1:1050530/1‑91 (MQ=255) aaaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAaga > 2:489878/1‑91 (MQ=255) aaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAagag < 1:1775674/91‑1 (MQ=255) tGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAagagag < 1:711558/91‑1 (MQ=255) tGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAagagag > 1:3827921/1‑91 (MQ=255) tGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAagagag > 1:3665526/1‑91 (MQ=255) ggTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATCTTTACGCATGATAAATACAAAAAAAGAGAgg < 2:3659845/91‑1 (MQ=255) gTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGa < 2:2133673/91‑1 (MQ=255) gTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGa < 2:2544963/91‑1 (MQ=255) gTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGa < 1:1375863/91‑1 (MQ=255) tAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATa > 2:428063/1‑91 (MQ=255) attCTTTTCAATTGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTATGATGTTTACGCATGATAAAAACAAAAAAAGAGAGGATAGt < 2:3232914/89‑1 (MQ=255) aaTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGactat < 1:3841752/91‑5 (MQ=255) aTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTc < 2:1476846/91‑1 (MQ=255) cAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCaa < 1:1190451/91‑1 (MQ=255) cAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCaa < 2:1847706/91‑1 (MQ=255) aTAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAAc < 1:491273/91‑1 (MQ=255) aTAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAAc < 1:87303/91‑1 (MQ=255) gCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAAt < 2:703643/91‑1 (MQ=255) gcgtaaaaaTCCTAGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTta > 1:973629/5‑91 (MQ=25) aaaaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATaaa < 2:1731130/91‑1 (MQ=255) aaaaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATaaa > 1:2568741/1‑91 (MQ=255) aaaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATaaaa < 2:874991/91‑1 (MQ=255) aaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAAt > 1:2712761/1‑91 (MQ=255) tCCTAGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTg > 1:2551376/1‑91 (MQ=255) tCCTAGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTg > 1:1276861/1‑91 (MQ=255) ccTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGt < 1:1330995/91‑1 (MQ=255) ccTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGt > 2:2850747/1‑91 (MQ=255) cTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTa > 1:3814260/1‑91 (MQ=255) cTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAAAAAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTa < 2:3569209/91‑1 (MQ=255) cTAGGTATTCAAGAATACCCAGGATTTTTACGCACGATAAATACAAAAAAAGAGAGGATAGTCCTCTCACACAATAGATAATAAAATTGTa > 2:141458/1‑91 (MQ=255) cTAGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTa > 2:2375409/1‑91 (MQ=255) cTAGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTa > 2:2375905/1‑91 (MQ=255) cTAGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTa > 1:3005897/1‑91 (MQ=255) cTAGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTa > 1:3182685/1‑91 (MQ=255) cTAGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTa > 1:889088/1‑91 (MQ=255) aGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGc > 1:1092835/1‑91 (MQ=255) aGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGc > 1:2983470/1‑91 (MQ=255) ggTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGcc > 2:1805752/1‑91 (MQ=255) gTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCa > 1:2510103/1‑91 (MQ=255) tATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAt < 1:1326227/91‑1 (MQ=255) tATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAt < 1:1723395/91‑1 (MQ=255) ttCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAttt > 1:3056071/1‑91 (MQ=255) ttCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAttt > 1:701883/1‑91 (MQ=255) tCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATttc < 1:2650335/91‑1 (MQ=255) cATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATttct > 2:307113/1‑91 (MQ=255) cATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATttct > 1:806944/1‑91 (MQ=255) tGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATttcttc < 1:558666/91‑1 (MQ=255) tGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATttcttc < 1:2953353/91‑1 (MQ=255) tGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATttcttc < 1:2025956/91‑1 (MQ=255) gAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGCTAATAAAATTGTAGCCATTTCTTcc > 2:3859624/1‑91 (MQ=255) aaGTGCCTTGGATTTTTACGAATTATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTcc < 1:3022554/90‑1 (MQ=255) aGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCa > 2:2854867/1‑91 (MQ=255) gTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAg < 1:3571687/91‑1 (MQ=255) | ACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAG > USA300TCH1516_ALE/1042706‑1042886 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |