| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,055,119 | C→A | 5.6% | G355C (GGT→TGT) | patA_2 ← | Putative N‑acetyl‑LL‑diaminopimelate aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,055,119 | 0 | C | A | 5.6% | 796.8 / 28.7 | 231 | G355C (GGT→TGT) | patA_2 | Putative N‑acetyl‑LL‑diaminopimelate aminotransferase |
| Reads supporting (aligned to +/- strand): ref base C (123/95); new base A (6/7); total (129/102) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.70e-01 | |||||||||||
Only 100 of 241 total aligned reads displayed.
ATTTAGTATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGATATG > USA300TCH1516_ALE/1055029‑1055209 | atttaGTATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTAcc < 2:1622947/91‑1 (MQ=255)atttaGTATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTAcc > 2:2595244/1‑91 (MQ=255) tttaGTATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCg > 2:808009/1‑91 (MQ=255) aGTATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAAt < 2:660568/91‑1 (MQ=255) gTATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAAtt > 1:3289274/1‑91 (MQ=255) aTTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCt > 2:3131705/1‑91 (MQ=255) aTTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCt < 1:2014482/91‑1 (MQ=255) aTTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACAGAATTcg < 2:2807569/91‑2 (MQ=255) tttAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTg > 2:3334857/1‑91 (MQ=255) ttAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGt < 1:3238911/91‑1 (MQ=255) ttAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACAGAATTcggt < 2:1583049/91‑4 (MQ=255) ttAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACAGAATTcggt < 2:1092375/91‑4 (MQ=255) tAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTa > 1:1619903/1‑91 (MQ=255) tAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCAGTa > 1:2388231/1‑91 (MQ=255) tAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTATGTa > 1:3237658/1‑91 (MQ=255) aaTATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTaaa > 2:1680132/1‑91 (MQ=255) atatTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAg < 1:1010195/91‑1 (MQ=255) atTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGa > 1:3314883/1‑91 (MQ=255) ttAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATg > 2:2729502/1‑91 (MQ=255) ttAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATg < 1:3384104/91‑1 (MQ=255) gCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGc > 2:2745490/1‑91 (MQ=255) cAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAgg > 2:2130043/1‑84 (MQ=255) cAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGcc > 2:24911/1‑91 (MQ=255) cAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGcc > 2:24154/1‑91 (MQ=255) cAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGcc < 1:1433357/91‑1 (MQ=255) cAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGcc > 1:1066567/1‑91 (MQ=255) aaGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCt < 1:2824141/91‑1 (MQ=255) aaGTCTCTTCATACCTTCTTGTAAACCATCCATTTCATAAGCATTGGAGATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCt < 2:3486452/91‑1 (MQ=255) gTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTgg < 2:2815195/91‑1 (MQ=255) tctcTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGa < 2:1778635/91‑1 (MQ=255) ctctTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGaa > 2:765322/1‑91 (MQ=255) ttCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGa < 2:3771706/91‑1 (MQ=255) ttCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGa < 2:1082648/91‑1 (MQ=255) ttCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGa < 1:591837/91‑1 (MQ=255) ttCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGa > 1:117914/1‑91 (MQ=255) tCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGAt > 1:2349098/1‑91 (MQ=255) cATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGAtt > 2:529576/1‑91 (MQ=255) aTACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTg < 1:2220731/91‑1 (MQ=255) aCCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCt > 2:30642/1‑91 (MQ=255) tcttTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAAt < 1:1109292/91‑1 (MQ=255) tcttTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCATGGAAAGATTGCTAAAt > 2:1615555/1‑91 (MQ=255) cttTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAAtg < 1:1345766/91‑1 (MQ=255) cttTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAAtg < 2:3359302/91‑1 (MQ=255) cttTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAAtg < 2:546082/91‑1 (MQ=255) cttTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAAtg < 1:983866/91‑1 (MQ=255) ttAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATgtgt < 1:2489549/91‑1 (MQ=255) ttAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATgtgt < 2:2080215/91‑1 (MQ=255) tAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGtt < 1:3852256/91‑1 (MQ=255) tAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGtt > 2:2931027/1‑91 (MQ=255) tAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGtt < 1:2542074/91‑1 (MQ=255) tAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGtt < 1:2699600/91‑1 (MQ=255) aaaaCATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTg > 1:726826/1‑91 (MQ=255) aaaCATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGa > 1:1753874/1‑91 (MQ=255) aaaCATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGa > 1:3531463/1‑91 (MQ=255) aaCATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGAt > 2:718814/1‑91 (MQ=255) aaCATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGAt > 2:2373427/1‑91 (MQ=255) aTCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCa > 1:851520/1‑91 (MQ=255) aTCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCa < 2:13914/91‑1 (MQ=255) tCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAAt > 1:2377827/1‑79 (MQ=255) cATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGCATTCTGCAAAGGATGAGCCTGGAACCATTGCTAAACGTGTTGATTCAAGt > 2:3603029/1‑91 (MQ=255) tttCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATgtgt > 2:1421151/1‑79 (MQ=255) tttCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATgtgt < 1:1421151/79‑1 (MQ=255) aTAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCg < 1:321210/91‑1 (MQ=255) aTAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCg > 1:2897882/1‑91 (MQ=255) tAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGa > 2:1467039/1‑91 (MQ=255) aaGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGac < 2:2181873/91‑1 (MQ=255) gCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGacac > 2:2042762/1‑91 (MQ=255) gCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGacac > 1:411589/1‑91 (MQ=255) cATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGAcaca < 1:1068882/91‑1 (MQ=255) aTAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACaa < 2:2326852/91‑1 (MQ=255) tAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACaaa < 2:3233795/91‑1 (MQ=255) gAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAAtt < 1:1563448/91‑1 (MQ=255) aaTCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCg > 2:329050/1‑91 (MQ=255) aTCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGa < 2:1563777/91‑1 (MQ=255) tCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGaa < 1:2865800/91‑1 (MQ=255) tCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGaa < 1:328987/91‑1 (MQ=255) ccTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGaaa < 1:1009551/91‑1 (MQ=255) ccTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGaaa < 1:2132165/91‑1 (MQ=255) ccTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGaaa < 1:1680132/91‑1 (MQ=255) cTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACTATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAAt < 1:3086474/91‑1 (MQ=255) cTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAAt < 2:2976403/91‑1 (MQ=255) tACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCg < 2:437196/91‑1 (MQ=255) aCAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGt > 2:2677752/1‑91 (MQ=255) aCAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGt > 2:3693456/1‑91 (MQ=255) cAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTc > 1:499250/1‑91 (MQ=255) tcaTCCTTTACAGAATTCGGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCa > 1:3427192/3‑91 (MQ=38) aaTCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCAt > 2:1974133/1‑91 (MQ=255) tCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATGGTCATCg > 1:1947933/1‑91 (MQ=255) ccTTTACCGAATTCTGAAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCgg < 2:3702886/91‑1 (MQ=255) tttACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTg > 2:2268864/1‑91 (MQ=255) ttACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGa < 2:3801199/91‑1 (MQ=255) ttACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGa < 1:2674537/91‑1 (MQ=255) ttACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGa < 1:105544/91‑1 (MQ=255) ttACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGa < 1:2102200/91‑1 (MQ=255) ttACAGAATTCGGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGa > 1:1518938/1‑91 (MQ=255) tACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGat > 1:334521/1‑91 (MQ=255) aCCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGata > 1:3733400/1‑91 (MQ=255) aCCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGata > 1:3863406/1‑91 (MQ=255) ccGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGatat < 2:1177118/91‑1 (MQ=255) cGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGATATg > 1:2398321/1‑91 (MQ=255) | ATTTAGTATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGATATG > USA300TCH1516_ALE/1055029‑1055209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |