| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,156,333 | G→A | 6.2% | intergenic (+22/‑302) | trxA_2 → / → uvrC | Thioredoxin/UvrABC system protein C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,156,333 | 0 | G | A | 6.2% | 831.6 / 26.2 | 258 | intergenic (+22/‑302) | trxA_2/uvrC | Thioredoxin/UvrABC system protein C |
| Reads supporting (aligned to +/- strand): ref base G (134/108); new base A (6/10); total (140/118) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.06e-01 | |||||||||||
Only 100 of 271 total aligned reads displayed.
CCAGTTGATAAAGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACTTGAGA > USA300TCH1516_ALE/1156243‑1156423 | ccAGTTGATAAAGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTggg < 2:2451433/91‑1 (MQ=255)ccAGTTGATAAAGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTggg < 1:2839527/91‑1 (MQ=255) cAGTTGATAAAGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTgggg > 2:488381/1‑91 (MQ=255) gTTGATAAAGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCa > 2:2967645/1‑91 (MQ=255) aTAAAGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTc > 2:905448/1‑91 (MQ=255) aTAAAGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTc < 1:291547/91‑1 (MQ=255) tAAAGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCt > 2:3488252/1‑91 (MQ=255) tAAAGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCt > 1:735090/1‑91 (MQ=255) tAAAGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCt < 1:2967645/91‑1 (MQ=255) aaGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGACGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCttt > 1:1214569/1‑91 (MQ=255) aaGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCttt < 2:390487/91‑1 (MQ=255) aaGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCttt > 1:2736651/1‑91 (MQ=255) aGTTGTTAGTATCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTa < 2:1442305/91‑1 (MQ=255) gttgttGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTaa > 1:105105/1‑91 (MQ=255) gttgttGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTACAAGTTACAACCAATGACGACTGGGGCATTTCTTTaa > 2:2669254/1‑91 (MQ=255) ttgttgGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAAt < 2:1743811/91‑1 (MQ=255) tgttgGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATg < 2:407925/91‑1 (MQ=255) tgttgGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCAATTCATTaaag < 1:1903319/91‑3 (MQ=255) gttgGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGa > 2:3661514/1‑91 (MQ=255) gttgGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACAAATGACGACTGGGGCATTTCTTTAATGa < 2:312083/91‑1 (MQ=255) ttgGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGaa > 1:3244768/1‑91 (MQ=255) tgGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTATAACCAATGACGACTGGGGCATTTCTTTAATGAAt > 1:1000155/1‑91 (MQ=255) tgGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAAt < 1:2424331/91‑1 (MQ=255) ggTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAAtt > 1:2242553/1‑91 (MQ=255) ttCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCt > 2:2193587/1‑91 (MQ=255) gaaaccaaAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTcc > 1:1617407/3‑91 (MQ=255) gaaaccaaAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTcc > 1:620469/3‑91 (MQ=255) gaaaccaaAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTcc > 2:2909970/3‑91 (MQ=255) gaaaccaaAAGAAAACGTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGATcc > 2:2344283/3‑91 (MQ=255) caaccaaAAGAAAACTTAGCTGAAGTTTTGGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCa < 1:2170055/91‑1 (MQ=255) caaccaaAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGAGCAATTCATTAAAGAAATGCCCCa < 1:1071942/91‑1 (MQ=25) aaccaaAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAg < 1:739985/91‑1 (MQ=255) aaccaaAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGAGCAATTCATTAAAGAAATGCCCCAg < 2:2231638/91‑1 (MQ=25) ccaaAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGtt > 2:3237094/1‑91 (MQ=255) caaAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGttt > 2:1703834/1‑91 (MQ=255) caaAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGttt > 2:1584182/1‑91 (MQ=255) aaaaGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGtttt < 1:1434114/91‑1 (MQ=255) aaaaGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGtttt > 2:1170630/1‑91 (MQ=255) aaaaGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGtttt > 1:540442/1‑91 (MQ=255) gAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTtttgtt > 2:2488241/1‑91 (MQ=255) gAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTtttgtt < 2:1198997/91‑1 (MQ=255) aaaCTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTtttgtttg < 2:1611850/91‑1 (MQ=255) aaCTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTttgtttgt > 1:3197262/1‑91 (MQ=255) aCTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTtttgttt < 1:842766/88‑1 (MQ=255) aCTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTtttgttt > 2:842783/1‑88 (MQ=255) cTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAGTGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTgtgt < 2:3403346/91‑1 (MQ=255) cTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTgtgt < 1:2881149/91‑1 (MQ=255) aGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGtttt > 1:2529899/1‑91 (MQ=255) gCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGttttt > 1:2603375/1‑91 (MQ=255) gCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGttttt < 2:812895/91‑1 (MQ=255) tGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTaa < 1:186032/91‑1 (MQ=255) tGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTaa < 1:3376753/91‑1 (MQ=255) gAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAat < 1:1584182/91‑1 (MQ=255) gAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAat > 1:2944950/1‑91 (MQ=255) aaGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAata < 2:2079495/91‑1 (MQ=255) aaGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAata < 1:135487/91‑1 (MQ=255) gTTTTAGATAAACATTTATAAGTTACAACCAATGGCGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAAtata < 2:3320976/91‑1 (MQ=255) ttttAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATaa < 1:1968866/91‑1 (MQ=255) ttAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATaaaa > 2:2797261/1‑91 (MQ=255) ttAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATaaaa < 1:488381/91‑1 (MQ=255) tAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGCCTTGCTCCAGTTTTTGTTCGTGTTTTTAATCTacaaa > 1:1671571/1‑91 (MQ=255) tAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATaaaaa > 1:1489826/1‑91 (MQ=255) aGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAg > 2:1324260/1‑91 (MQ=255) aGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAg < 2:2399008/91‑1 (MQ=255) tAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTg < 2:540442/91‑1 (MQ=255) ttATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATa > 1:2457775/1‑91 (MQ=255) tataAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATaa > 1:385862/1‑91 (MQ=255) ataAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAg > 1:3401384/1‑91 (MQ=255) taAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGt < 2:2860784/91‑1 (MQ=255) aaGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGtc > 2:3544091/1‑91 (MQ=255) aGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGGTAAGtca < 1:1613824/91‑1 (MQ=255) aGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGtca < 2:2050318/91‑1 (MQ=255) aGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGtca < 1:345404/91‑1 (MQ=255) gTTACAACCGATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGtcat < 1:3716073/91‑1 (MQ=255) ttACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGtcatc > 2:2033629/1‑91 (MQ=255) aaCCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCatat > 2:793173/1‑91 (MQ=255) aaCCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCatat > 2:3455054/1‑91 (MQ=255) aCCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATAtt > 2:3835966/1‑91 (MQ=255) ccAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTg > 1:993179/1‑91 (MQ=255) cAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGt < 2:2611620/91‑1 (MQ=255) cAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGt < 1:3195291/91‑1 (MQ=255) aTGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGttt < 1:2358229/91‑1 (MQ=255) gacgacTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTAc > 1:262259/1‑91 (MQ=255) cgacTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGa > 1:888115/1‑91 (MQ=255) gacTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGAc < 2:270770/91‑1 (MQ=255) gacTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGAc < 2:3738524/91‑1 (MQ=255) gacTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGAc < 2:186858/91‑1 (MQ=255) gacTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGAc > 2:2841426/1‑91 (MQ=255) aacTGGAGCAATTCATTAAAGAAATGCCCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGAc > 1:1151995/2‑91 (MQ=25) acTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACt > 1:909835/1‑91 (MQ=255) acTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACt > 2:2282200/1‑91 (MQ=255) cTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACtt > 2:1753646/1‑91 (MQ=255) cTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACtt < 2:3870407/91‑1 (MQ=255) cTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACtt > 1:3591889/1‑91 (MQ=255) cTGGAGCAATTCATTAAAGAAATGCCCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACtt > 2:338521/1‑91 (MQ=25) ggggCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACTTga < 1:915060/91‑1 (MQ=255) ggggCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACTTga < 2:921092/91‑1 (MQ=255) ggCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACTTgaga > 1:3338243/1‑91 (MQ=255) ggCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACTTgaga < 1:3048238/91‑1 (MQ=255) ggCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACTTgaga < 1:2402750/91‑1 (MQ=255) | CCAGTTGATAAAGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACTTGAGA > USA300TCH1516_ALE/1156243‑1156423 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |