| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,156,337 | T→A | 6.6% | intergenic (+26/‑298) | trxA_2 → / → uvrC | Thioredoxin/UvrABC system protein C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,156,337 | 0 | T | A | 6.6% | 909.0 / 37.5 | 268 | intergenic (+26/‑298) | trxA_2/uvrC | Thioredoxin/UvrABC system protein C |
| Reads supporting (aligned to +/- strand): ref base T (139/111); new base A (6/12); total (145/123) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.66e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.47e-01 | |||||||||||
Only 100 of 275 total aligned reads displayed.
TTGATAAAGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACTTGAGAATGG > USA300TCH1516_ALE/1156247‑1156427 | tGATAAAGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCAtt < 2:1448772/91‑1 (MQ=255) gATAAAGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCAttt > 2:2229995/1‑91 (MQ=255) aTAAAGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTc > 2:905448/1‑91 (MQ=255) aaGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGACGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCttt > 1:1214569/1‑91 (MQ=255) aaGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCttt > 1:2736651/1‑91 (MQ=255) aGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTa > 1:2943514/1‑91 (MQ=255) gttgttGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTaa > 1:105105/1‑91 (MQ=255) ttgttgGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAAt < 2:1743812/91‑1 (MQ=255) ttgttgGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGAGCAATTCATTaaa < 2:1972736/91‑2 (MQ=255) gttgGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACCTTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGa > 1:3072736/1‑91 (MQ=255) gttgGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGa > 2:3661514/1‑91 (MQ=255) tgGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTATAACCAATGACGACTGGGGCATTTCTTTAATGAAt > 1:1000155/1‑91 (MQ=255) tgGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAAt < 1:2424331/91‑1 (MQ=255) ggTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAAtt > 1:2242553/1‑91 (MQ=255) ttCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCt < 1:284753/91‑1 (MQ=255) gaaaccaaAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTcc > 1:1617329/3‑91 (MQ=255) caaccaaAAGAAAACTTAGCTGAAGTTTTGGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCa < 1:2170055/91‑1 (MQ=255) caaccaaAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGAGCAATTCATTAAAGAAATGCCCCa < 1:1071942/91‑1 (MQ=25) caaccaaAAGAAAACTTAGCTGAAGATTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCa < 1:3619718/91‑1 (MQ=255) aaccaaAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAg < 2:2192898/91‑1 (MQ=255) aaccaaAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAg < 2:3175744/91‑1 (MQ=255) ccaaAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGtt < 2:2654556/91‑1 (MQ=255) caaAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGttt > 2:1584275/1‑91 (MQ=255) aaaaGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGtttt > 2:3316208/1‑91 (MQ=255) aaaaGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAAGTGCTCCAGtttt < 1:2996449/91‑1 (MQ=255) gAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTtttgtt < 2:1198997/91‑1 (MQ=255) gAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACAGGGGCATTTCTTTAATGAATTGCTCCAGTTtttgtg > 2:3841899/1‑90 (MQ=255) aaaCTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTtttgtttg > 1:3228535/1‑91 (MQ=255) aCTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTtttgttt < 1:842766/88‑1 (MQ=255) aCTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTtttgttt > 2:842783/1‑88 (MQ=255) aCTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTtgtg > 1:3377498/1‑91 (MQ=255) aCTTAGCTGAAGATTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTtgtg > 1:2960562/1‑91 (MQ=255) cTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAGTGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTgtgt < 2:3403346/91‑1 (MQ=255) ttAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGtt > 2:2907121/1‑91 (MQ=255) aGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGtttt > 1:2529899/1‑91 (MQ=255) gCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGttttt < 2:812895/91‑1 (MQ=255) gCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGttttt > 1:2603375/1‑91 (MQ=255) cTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTa > 1:991156/1‑91 (MQ=255) tGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTaa < 1:186032/91‑1 (MQ=255) tGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTaa < 1:806267/91‑1 (MQ=255) tGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTaa < 1:3350726/91‑1 (MQ=255) gAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAat > 1:3403073/1‑91 (MQ=255) gAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAat < 1:1584182/91‑1 (MQ=255) aaGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAata < 2:2079495/91‑1 (MQ=255) ttttAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATaa < 2:440952/91‑1 (MQ=255) ttttAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATaa < 1:1968866/91‑1 (MQ=255) tttAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATaaa < 2:2820799/91‑1 (MQ=255) tttAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATaaa < 1:912209/91‑1 (MQ=255) ttAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATaaaa < 1:488381/91‑1 (MQ=255) tAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGCCTTGCTCCAGTTTTTGTTCGTGTTTTTAATCTacaaa > 1:1671571/1‑91 (MQ=255) tAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATaaaaa < 1:2909970/91‑1 (MQ=255) tAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATaaaaa > 1:1489826/1‑91 (MQ=255) aGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTtttgt > 2:1708834/1‑70 (MQ=255) aGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAg > 2:2528246/1‑91 (MQ=255) gATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGt > 1:3863333/1‑91 (MQ=255) tAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTg < 1:1896484/91‑1 (MQ=255) aaCATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGaa > 1:3738524/1‑91 (MQ=255) cATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATg < 2:400844/91‑1 (MQ=255) aTTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGa > 1:2351945/1‑91 (MQ=255) tttATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGAt > 2:3818418/1‑91 (MQ=255) ttATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATa > 1:2457775/1‑91 (MQ=255) tataAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATaa < 1:879562/91‑1 (MQ=255) tataAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATaa < 1:1140733/91‑1 (MQ=255) taAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGt < 2:2858208/91‑1 (MQ=255) aaGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGtc > 1:319628/1‑91 (MQ=255) aaGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGtc > 2:3544091/1‑91 (MQ=255) aGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGtca < 2:2049711/91‑1 (MQ=255) aGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGtca < 1:1608001/91‑1 (MQ=255) aGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGtca < 1:345404/91‑1 (MQ=255) gTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGtcat < 2:2759511/91‑1 (MQ=255) tACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGtcatca < 2:3479643/91‑1 (MQ=255) tACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGtcatca < 1:3316208/91‑1 (MQ=255) aCAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTcatcat < 2:2410094/91‑1 (MQ=255) aaCCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCatat > 2:3455054/1‑91 (MQ=255) aaCCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCatat > 2:793173/1‑91 (MQ=255) ccAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTg > 1:594678/1‑91 (MQ=255) ccAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTg > 1:668760/1‑91 (MQ=255) cAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGt < 2:1636367/91‑1 (MQ=255) aaTGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGtt < 1:905448/91‑1 (MQ=255) aTGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGttt < 1:1282607/91‑1 (MQ=255) aTGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGttt < 1:1418873/91‑1 (MQ=255) aTGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGttt < 1:737159/91‑1 (MQ=255) aTGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGttt > 2:38915/1‑91 (MQ=255) gacgacTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTAc > 1:262259/1‑91 (MQ=255) gacTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGAc > 2:2987942/1‑91 (MQ=255) gacTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGAc < 2:186858/91‑1 (MQ=255) gacTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGAc < 2:1358603/91‑1 (MQ=255) gacTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGAc < 2:1260385/91‑1 (MQ=255) gacTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGAc < 2:3738524/91‑1 (MQ=255) acTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACt > 2:2281887/1‑91 (MQ=255) acTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACt > 2:2310281/1‑91 (MQ=255) cTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACtt < 2:2390563/91‑1 (MQ=255) cTGGAGCAATTCATTAAAGAAATGCCCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACtt > 2:1085144/1‑91 (MQ=25) cTGGAGCAATTCATTAAAGAAATGCCCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACtt > 2:338215/1‑91 (MQ=25) tGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACTTg < 2:597263/91‑1 (MQ=255) ggggCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACTTga < 2:921092/91‑1 (MQ=255) ggggCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATAT‑AAAAGTTGAATGATAAGTCATCATATTGTTTACGACTTgag > 2:2676371/1‑91 (MQ=255) ggCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACTTgaga < 1:2402750/91‑1 (MQ=255) gCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACTTGAGaa > 2:332520/1‑91 (MQ=255) cATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACTTGAGAAt < 2:2922767/91‑1 (MQ=255) | TTGATAAAGTTGTTGGTTTCCAACCAAAAGAAAACTTAGCTGAAGTTTTAGATAAACATTTATAAGTTACAACCAATGACGACTGGGGCATTTCTTTAATGAATTGCTCCAGTTTTTGTTTGTGTTTTTAATATAAAAAGTTGAATGATAAGTCATCATATTGTTTACGACTTGAGAATGG > USA300TCH1516_ALE/1156247‑1156427 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |