| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,218,730 | G→T | 7.1% | intergenic (+221/+42) | USA300HOU_RS06065 → / ← USA300HOU_RS06070 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,218,730 | 0 | G | T | 7.1% | 795.2 / 30.4 | 232 | intergenic (+221/+42) | USA300HOU_RS06065/USA300HOU_RS06070 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (116/98); new base T (7/10); total (123/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.24e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 245 total aligned reads displayed.
TAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATAC > USA300TCH1516_ALE/1218640‑1218820 | tAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAgg > 2:2595824/1‑91 (MQ=255)tAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAgg < 1:377420/91‑1 (MQ=255)tAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAgg < 1:2301818/91‑1 (MQ=255) aCTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGac < 2:514073/91‑1 (MQ=255) aCTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGac < 1:2572307/91‑1 (MQ=255) cTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTATCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGact > 2:3198227/1‑91 (MQ=255) tAAATGATGAAACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactac < 2:2674063/91‑1 (MQ=255) aaaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactact < 1:2098722/91‑1 (MQ=255) aaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActt < 1:1060237/91‑1 (MQ=255) atgatgATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActtt < 1:691039/91‑1 (MQ=255) tgatgaTACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttc < 1:581553/91‑1 (MQ=255) tgatgaTACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttc > 1:2974633/1‑91 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttct > 2:1459732/1‑91 (MQ=255) atgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttctt > 2:941556/1‑91 (MQ=255) tgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTACCTAATAAATATACACCTCACCATAAGAAAGGACTActttctt‑t < 2:116995/91‑1 (MQ=255) tgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttctt‑t > 1:3235590/1‑91 (MQ=255) tgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttctt‑t < 2:647186/91‑1 (MQ=255) gatACGTTATTTAGAGACACGAGACTTCGTGTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAATGTAGTCCTTTCTT‑Atg < 2:2803184/91‑1 (MQ=12) gatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCtt‑tt < 2:603255/91‑1 (MQ=255) atAAGTTATTTAAAAAAACGATACTTCGTTTGAATAAACGCATTAAATAATAAATAAACCCCTCA‑CAAAAGAAAGTAGTCCTTTCTT‑Atgg < 2:2111485/91‑2 (MQ=12) tACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Ttgt > 2:2606153/1‑91 (MQ=255) aCGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Ttgtg < 2:1979975/91‑1 (MQ=255) aCGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Ttgtg > 1:1688173/1‑91 (MQ=255) aCGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Ttgtg > 1:2196706/1‑91 (MQ=255) aCGTTATTTAAAAACACGATACTTCGTTTCAAAGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Ttgtg > 2:3801020/1‑91 (MQ=255) cGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGa < 1:195358/91‑1 (MQ=255) gTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAg > 1:1755352/1‑91 (MQ=255) ttATTTAAAAGCGCTATACTTCGTGTCAATGAACGCATTAAATCATAAATGAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAgg < 2:3603414/91‑1 (MQ=255) ttATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAgg > 1:3361492/1‑91 (MQ=255) ttATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCAT‑TTGTGAgg > 2:3502686/1‑91 (MQ=255) aTTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGgtg > 1:656775/1‑91 (MQ=255) tttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactact < 1:480691/75‑1 (MQ=255) tttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGgtgt < 1:2672189/91‑1 (MQ=255) tttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGgtgt < 2:2183721/91‑1 (MQ=255) aaaaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTa > 2:3103986/1‑91 (MQ=255) aaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTAtt > 2:1435128/1‑91 (MQ=255) aaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTAtt > 1:3302540/1‑91 (MQ=255) aaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTAtt > 1:2874496/1‑91 (MQ=255) aaaCACGATACTTCGTGTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGTAAGGACTACTTTCTT‑TTGTGAGGTGTTTAtt < 2:2970463/91‑1 (MQ=255) cGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCg < 1:3198602/91‑1 (MQ=255) gATACTTCGTTTCAATGAACGCATTAAATAATAAATGAACACCTCACCATGCGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGa < 2:1701818/91‑1 (MQ=255) gATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGa > 1:2249437/1‑91 (MQ=255) aTACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGAc > 1:1354463/1‑91 (MQ=255) tACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACa > 2:2035189/1‑91 (MQ=255) tACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACa > 2:2224930/1‑91 (MQ=255) ccTTCGTTTCAATGAACACATTAAATAATAAATAAACACCTCACCATAAGAAAGGCCTACTTTCTT‑TTGTGAGGTGTTTCTTTGTCGACaa > 2:759542/2‑91 (MQ=255) aCTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACaa > 1:751503/1‑91 (MQ=255) tCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACtt > 1:1002745/1‑91 (MQ=255) cGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTg > 2:1495819/1‑91 (MQ=255) tttCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGAt > 2:325533/1‑91 (MQ=255) tttCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGAt > 1:3137684/1‑91 (MQ=255) ttCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGAtt < 2:1231463/91‑1 (MQ=255) tCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTa < 2:2272389/91‑1 (MQ=255) tCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTATCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTa < 1:3283508/91‑1 (MQ=255) cAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTAt < 2:3176564/91‑1 (MQ=255) cAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTAt > 1:1617134/1‑91 (MQ=255) aTGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGa > 1:2947183/1‑91 (MQ=255) aaCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTg > 1:576737/1‑91 (MQ=255) aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt < 1:982641/91‑1 (MQ=255) aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt > 2:2857027/1‑91 (MQ=255) aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt < 2:1354463/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:1110520/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:2512403/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 2:2973184/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:1458130/91‑1 (MQ=255) cATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTc < 2:3637281/91‑1 (MQ=255) aTTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCAT‑CTGTGAGGAGTTTATTAGTCGACAACTTGATTATGATTGTTTCa > 2:1811735/1‑91 (MQ=255) taaataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtt > 1:599926/1‑91 (MQ=255) aataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttt > 1:1615408/1‑91 (MQ=255) aataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttt < 1:1415530/91‑1 (MQ=255) aataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttt < 1:719202/91‑1 (MQ=255) ataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAttttt > 2:2682939/1‑91 (MQ=255) aataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTg < 1:2883479/91‑1 (MQ=255) atagataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGa < 1:3494475/91‑1 (MQ=255) ataaataaACACCCCACCAGAAGAAAGGACTACGTTCTT‑TTTTGAGGGGTTTATTTGGCGACAACTGGATTATGATTGTTTCATTTTGTGa < 2:173196/91‑1 (MQ=255) taaataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGaa > 1:859416/1‑91 (MQ=255) aataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATa > 1:2642351/1‑91 (MQ=255) aataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATa > 2:885273/1‑91 (MQ=255) taaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAg > 1:2576072/1‑91 (MQ=255) aaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGtt > 2:2243494/1‑91 (MQ=255) acacCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTc > 1:2762401/1‑91 (MQ=255) cacCTCACAA‑AAGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCa > 1:2134192/1‑91 (MQ=17) acCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCAt > 2:1131647/1‑91 (MQ=255) acCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCAt > 2:478306/1‑91 (MQ=255) ccTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATa < 1:3836432/91‑1 (MQ=255) ccTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATa > 1:3734071/1‑91 (MQ=255) ccTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATa > 2:2388750/1‑91 (MQ=255) cTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATaa > 2:3166741/1‑91 (MQ=255) aCCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCa > 2:3876511/1‑91 (MQ=255) aCCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCa < 1:956315/91‑1 (MQ=255) ccATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGaa < 2:255837/76‑1 (MQ=255) ccATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg > 2:1525245/1‑91 (MQ=255) caaaaGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg > 2:3729774/4‑91 (MQ=21) aTAAGAGAGGACTACTTTCTT‑TTGTGAGGTGTTTATCTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgt < 2:3835192/91‑1 (MQ=255) tAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgtg < 2:576737/91‑1 (MQ=255) tAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgtg > 1:1241385/1‑91 (MQ=255) aGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTa < 2:3750531/91‑1 (MQ=255) ggACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATa > 1:266788/1‑91 (MQ=255) ggACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATa < 1:2820557/91‑1 (MQ=255) gACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATAc > 2:3693712/1‑91 (MQ=255) | TAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATAC > USA300TCH1516_ALE/1218640‑1218820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |