| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,218,732 | C→G | 7.5% | intergenic (+223/+40) | USA300HOU_RS06065 → / ← USA300HOU_RS06070 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,218,732 | 0 | C | G | 7.5% | 775.2 / 39.1 | 227 | intergenic (+223/+40) | USA300HOU_RS06065/USA300HOU_RS06070 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (117/93); new base G (7/10); total (124/103) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.70e-01 | |||||||||||
Only 100 of 246 total aligned reads displayed.
ACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAA > USA300TCH1516_ALE/1218642‑1218822 | cTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTATCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGact > 2:3198227/1‑91 (MQ=255) tAAATGATGAAACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactac < 2:2674063/91‑1 (MQ=255) aaaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactact < 1:489917/91‑1 (MQ=255) aaaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactact < 1:3344668/91‑1 (MQ=255) aaaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactact < 1:2908845/91‑1 (MQ=255) aaaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactact < 1:2098722/91‑1 (MQ=255) aaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActt < 1:1060237/91‑1 (MQ=255) atgatgATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActtt < 1:691039/91‑1 (MQ=255) tgatgaTACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttc < 1:581553/91‑1 (MQ=255) tgatgaTACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttc < 1:2551420/91‑1 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttct > 2:635964/1‑91 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttct > 2:2401108/1‑91 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttct > 2:1458130/1‑91 (MQ=255) atgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttctt > 2:941441/1‑91 (MQ=255) tgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTACCTAATAAATATACACCTCACCATAAGAAAGGACTActttctt‑t < 2:116995/91‑1 (MQ=255) tgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttctt‑t > 2:649801/1‑91 (MQ=255) gatACGTTATTTAGAGACACGAGACTTCGTGTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAATGTAGTCCTTTCTT‑Atg < 2:2803184/91‑1 (MQ=12) gatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttcttatg < 1:2575593/91‑4 (MQ=21) tACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Ttgt > 2:2606153/1‑91 (MQ=255) aCGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Ttgtg > 1:2196706/1‑91 (MQ=255) aCGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Ttgtg > 1:1688173/1‑91 (MQ=255) cGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGa > 2:2064695/1‑91 (MQ=255) cGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGa < 2:2227039/91‑1 (MQ=255) cGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGa < 1:2876537/91‑1 (MQ=255) gTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAg > 1:1755352/1‑91 (MQ=255) ttATTTAAAAGCGCTATACTTCGTGTCAATGAACGCATTAAATCATAAATGAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAgg < 2:3603414/91‑1 (MQ=255) ttATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCAT‑TTGTGAgg > 2:3502686/1‑91 (MQ=255) aTTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGgtg > 1:656775/1‑91 (MQ=255) aTTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGgtg < 1:2605515/91‑1 (MQ=255) tttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactact < 1:480691/75‑1 (MQ=255) tttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGgtgt < 1:2671994/91‑1 (MQ=255) ttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGtt < 2:1236386/91‑1 (MQ=14) aaaaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTa > 2:1486395/1‑91 (MQ=255) acacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTAttta < 1:3472185/91‑2 (MQ=11) cGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCg > 2:1187627/1‑91 (MQ=255) cGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCg < 1:281834/91‑1 (MQ=255) gATACTTCGTTTCAATGAACGCATTAAATAATAGATATACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGa > 1:3098116/1‑91 (MQ=255) gATACTTCGTTTCAATGAACGCATTAAATAATAAATGAACACCTCACCATGCGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGa < 2:1701818/91‑1 (MQ=255) gATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGa > 1:2249437/1‑91 (MQ=255) aTACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGAc > 1:1354463/1‑91 (MQ=255) aCTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACaa > 2:1992757/1‑91 (MQ=255) aCTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACaa > 1:751503/1‑91 (MQ=255) ttCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACt < 2:560727/91‑1 (MQ=255) tCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACtt > 1:1002745/1‑91 (MQ=255) cGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTg > 2:1495819/1‑91 (MQ=255) tttCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGAt > 2:325533/1‑91 (MQ=255) cAATGAACGCATTCAAGAATAAATGACCACCTCACCAGATGAGAGGACTAGTTTCTT‑TTGTGAGGTGTTTATTTGTCGGCAACTTtattat < 2:3175290/91‑1 (MQ=255) cAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTAt > 1:1617134/1‑91 (MQ=255) aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt < 1:3275020/91‑1 (MQ=255) aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt < 1:982641/91‑1 (MQ=255) aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt > 2:2857027/1‑91 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:3198227/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:1110520/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:3569421/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:1458130/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 2:2973184/91‑1 (MQ=255) gCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGttt < 2:3799854/91‑1 (MQ=255) cATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTc < 2:3637281/91‑1 (MQ=255) aTTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCAT‑CTGTGAGGAGTTTATTAGTCGACAACTTGATTATGATTGTTTCa > 2:1811735/1‑91 (MQ=255) ttAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAt > 2:2297962/1‑91 (MQ=255) taaataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtt > 2:142639/1‑91 (MQ=255) taaataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtt > 1:599926/1‑91 (MQ=255) aataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttt < 1:719202/91‑1 (MQ=255) aataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttt < 1:1415530/91‑1 (MQ=255) aataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttt > 1:1615408/1‑91 (MQ=255) ataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGttt > 1:3288891/1‑84 (MQ=255) ataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAttttt > 2:2682939/1‑91 (MQ=255) aataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTg < 1:2064695/91‑1 (MQ=255) ataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGa < 2:2947183/91‑1 (MQ=255) ataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGa > 2:1733639/1‑91 (MQ=255) taaataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGaa > 1:859416/1‑91 (MQ=255) taaataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGaa > 2:3040105/1‑91 (MQ=255) taaataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGaa > 2:2569645/1‑91 (MQ=255) acacCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTc > 1:2761356/1‑91 (MQ=255) cacCTCACAA‑AAGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCa > 1:2134192/1‑91 (MQ=17) cacCTCA‑CAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCa > 2:1542798/1‑91 (MQ=17) acCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCAt > 2:478306/1‑91 (MQ=255) ccTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATa > 1:3734566/1‑91 (MQ=255) ccTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATa < 1:3836432/91‑1 (MQ=255) cTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATaa > 2:3166741/1‑91 (MQ=255) cTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATaa < 2:2184102/91‑1 (MQ=255) aCCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCa > 2:3876511/1‑91 (MQ=255) aCCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCa > 1:266435/1‑91 (MQ=255) aCCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCa < 1:956315/91‑1 (MQ=255) aCCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCa < 2:2244574/91‑1 (MQ=255) caaaaGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg > 2:3729774/4‑91 (MQ=21) cATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAgg < 2:878955/91‑1 (MQ=255) aTAAGAGAGGACTACTTTCTT‑TTGTGAGGTGTTTATCTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgt < 2:3835192/91‑1 (MQ=255) tAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgtg > 1:1241385/1‑91 (MQ=255) tAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgtg < 2:577747/91‑1 (MQ=255) aGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTa < 2:3750531/91‑1 (MQ=255) aGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTa > 1:3211743/1‑91 (MQ=255) gAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAg > 2:2158132/1‑91 (MQ=255) ggACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATa > 1:2956183/1‑91 (MQ=255) gACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATAc > 2:3693712/1‑91 (MQ=255) gACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATAc < 1:2857027/91‑1 (MQ=255) actactTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACa > 2:2026196/1‑91 (MQ=255) actactTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACa < 1:2401108/91‑1 (MQ=255) actactTTCTT‑TTGTGAGGTG‑TTATTTGTCGACAAGTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACaa < 2:1052960/91‑1 (MQ=255) ctactTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACaa > 2:497288/1‑91 (MQ=255) | ACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAA > USA300TCH1516_ALE/1218642‑1218822 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |