| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,218,734 | A→C | 7.4% | intergenic (+225/+38) | USA300HOU_RS06065 → / ← USA300HOU_RS06070 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,218,734 | 0 | A | C | 7.4% | 748.6 / 40.8 | 227 | intergenic (+225/+38) | USA300HOU_RS06065/USA300HOU_RS06070 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (117/93); new base C (7/10); total (124/103) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
Only 100 of 246 total aligned reads displayed.
TAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAG > USA300TCH1516_ALE/1218645‑1218824 | tAAATGATGAAACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactac < 2:2674063/91‑1 (MQ=255) aaaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactact < 1:3344668/91‑1 (MQ=255) aaaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactact < 1:2908845/91‑1 (MQ=255) aaaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactact < 1:2098722/91‑1 (MQ=255) aaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActt < 1:1060237/91‑1 (MQ=255) atgatgATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActtt > 2:3735914/1‑91 (MQ=255) tgatgaTACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttc > 2:2432498/1‑91 (MQ=255) tgatgaTACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttc < 1:581553/91‑1 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttct > 2:635964/1‑91 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttct < 1:2152408/91‑1 (MQ=255) atgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttctt > 2:941441/1‑91 (MQ=255) tgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttctt‑t > 1:3235590/1‑91 (MQ=255) tgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttctt‑t > 2:649801/1‑91 (MQ=255) tgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttctt‑t > 1:772856/1‑91 (MQ=255) gatACGTTATTTAGAGACACGAGACTTCGTGTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAATGTAGTCCTTTCTT‑At‑g < 2:2803184/91‑1 (MQ=12) atACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttcttatgg < 2:2111484/91‑5 (MQ=21) atACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAACAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttcttatgg < 1:2268351/91‑5 (MQ=17) aCGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Tt‑gtg > 1:1688173/1‑91 (MQ=255) aCGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Tt‑gtg > 1:2196706/1‑91 (MQ=255) cGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATACTAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGa < 2:1143208/91‑1 (MQ=255) cGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGa < 1:195358/91‑1 (MQ=255) cGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGa < 2:2227039/91‑1 (MQ=255) aTTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGgtg < 1:2605515/91‑1 (MQ=255) aTTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGgtg > 1:656775/1‑91 (MQ=255) aTTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAAGAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGgtg < 2:1364449/91‑1 (MQ=255) tttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactact > 2:480691/1‑75 (MQ=255) tttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactact < 1:480691/75‑1 (MQ=255) tttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGgtgt < 1:2671994/91‑1 (MQ=255) ttAAAAACACGATACTTCGTTTCATTGAACGCATTAAATAATAAATAAACACCTCACAA‑AAGAAAGTAGTCCTTTCTT‑ATGGTGAGGTGtt < 2:3609629/91‑1 (MQ=14) ttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACGA‑AAGAAAGTAGTCCTTTCTTATG‑GTGAGGTGtt < 1:70984/91‑1 (MQ=17) tAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGttt < 2:45669/91‑1 (MQ=255) aaaaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTa > 2:3103986/1‑91 (MQ=255) aaaaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTa < 1:612472/91‑1 (MQ=255) aaaaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTa > 2:1487231/1‑91 (MQ=255) aaaaCACGATACTTCGTTTCAATGAACGCATTCAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTAt > 2:3817361/1‑91 (MQ=255) aaaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTAt > 1:3127361/1‑91 (MQ=255) aaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTAtt > 2:1435128/1‑91 (MQ=255) aaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTAtt > 1:2244574/1‑91 (MQ=255) aaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTAtt > 1:3302540/1‑91 (MQ=255) aaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTAtt > 1:2874496/1‑91 (MQ=255) aaaCACGATACTTCGTGTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGTAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTAtt < 2:2970463/91‑1 (MQ=255) cGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCg < 1:281834/91‑1 (MQ=255) aTACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGAc > 1:1354463/1‑91 (MQ=255) aCTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACaa > 2:1992757/1‑91 (MQ=255) ttCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACt < 2:560727/91‑1 (MQ=255) tCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACtt > 1:1002745/1‑91 (MQ=255) cGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGAACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTg < 2:3198896/91‑1 (MQ=255) tttCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGAt > 2:1917658/1‑91 (MQ=255) ttCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGAtt > 2:2771398/1‑91 (MQ=255) ttCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGAtt < 2:1231463/91‑1 (MQ=255) gtCAGTGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGAtt < 2:3436246/90‑1 (MQ=255) cAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTAt > 1:1617134/1‑91 (MQ=255) cAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTAt < 2:3176564/91‑1 (MQ=255) gAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGAtt < 2:2196706/91‑1 (MQ=255) aaCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTg > 1:576737/1‑91 (MQ=255) aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt > 2:2857027/1‑91 (MQ=255) aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt < 1:3275020/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:1458130/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 2:2973184/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:3569421/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:3198227/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:1110520/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:2512403/91‑1 (MQ=255) aTTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCa > 1:3813401/1‑91 (MQ=255) ttAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAt > 2:2297962/1‑91 (MQ=255) aataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttt < 1:719202/91‑1 (MQ=255) aataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttt > 1:1615408/1‑91 (MQ=255) aataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttt < 1:1415530/91‑1 (MQ=255) aataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTg < 1:2064695/91‑1 (MQ=255) aataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTg > 2:3840871/1‑91 (MQ=255) atagataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGa < 1:3494475/91‑1 (MQ=255) ataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGa > 2:1733639/1‑91 (MQ=255) taaataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGaa > 2:2569645/1‑91 (MQ=255) taaataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGaa > 1:859416/1‑91 (MQ=255) taaataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGaa < 2:1170818/91‑1 (MQ=255) aaataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAAt > 1:1731909/1‑91 (MQ=255) aataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATa > 1:2642351/1‑91 (MQ=255) aaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATACGt > 2:1038264/1‑91 (MQ=255) aaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGtt > 2:2245263/1‑91 (MQ=255) acacCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTc > 2:1709639/1‑91 (MQ=255) acacCTCA‑CAAAAGAAAGTAGTCCTTTCTTATG‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTc > 2:3727214/1‑91 (MQ=14) acacCTCA‑CAAAAGAAAGTAGTCCTTTCTTATG‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTc > 1:2843065/1‑91 (MQ=14) cacCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCa > 2:3506253/1‑91 (MQ=255) ccTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATa < 2:2616218/91‑1 (MQ=255) ccTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATa < 1:3836432/91‑1 (MQ=255) cTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATaa > 2:3166741/1‑91 (MQ=255) cACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATc < 1:2712207/91‑1 (MQ=255) aCCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCa < 1:957474/91‑1 (MQ=255) ccATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGaa > 1:255837/1‑76 (MQ=255) ccATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg > 2:1525245/1‑91 (MQ=255) cATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAgg < 2:878955/91‑1 (MQ=255) tAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgtg > 1:1241385/1‑91 (MQ=255) tAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgtg < 2:577747/91‑1 (MQ=255) aGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTa < 2:3750620/91‑1 (MQ=255) gAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAg > 2:2158132/1‑91 (MQ=255) ggACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATa > 1:2956183/1‑91 (MQ=255) ggACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATa < 2:3693016/91‑1 (MQ=255) actactTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACa > 2:1465415/1‑91 (MQ=255) actactTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACa > 2:2026196/1‑91 (MQ=255) tactTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACaaa < 2:1551875/91‑1 (MQ=255) | TAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAG > USA300TCH1516_ALE/1218645‑1218824 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |