| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,273,925 | C→T | 9.3% | R110C (CGT→TGT) | codY → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,273,925 | 0 | C | T | 9.3% | 623.6 / 38.3 | 204 | R110C (CGT→TGT) | codY | GTP‑sensing transcriptional pleiotropic repressor CodY |
| Reads supporting (aligned to +/- strand): ref base C (90/95); new base T (8/11); total (98/106) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 | |||||||||||
Only 100 of 211 total aligned reads displayed.
ATGGAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGATT > USA300TCH1516_ALE/1273835‑1274015 | tGGAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCg > 2:3540882/1‑91 (MQ=255) ggAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGt > 2:1043023/1‑91 (MQ=255) aaGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTAc > 1:2511682/1‑91 (MQ=255) aGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTTGTAcg < 2:858999/91‑2 (MQ=255) aGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTTGTAcg < 1:1519274/91‑2 (MQ=255) aGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTTGTAcg < 1:2933783/91‑2 (MQ=255) aGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACa < 2:485029/91‑1 (MQ=255) aGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACa < 2:3290926/91‑1 (MQ=255) aGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACa < 2:3152491/91‑1 (MQ=255) aGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACa > 1:606425/1‑91 (MQ=255) aGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACa > 1:1111130/1‑91 (MQ=255) ttAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTTGTAcgac < 1:3848909/91‑4 (MQ=255) aacaaacaGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTAt > 1:952614/1‑91 (MQ=255) aacaaacaGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACGAt < 1:3672100/91‑1 (MQ=255) acaaacaGAATCAAATATTGATATCGACAATGTATCAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTTGTACGACTATc < 1:3110550/91‑1 (MQ=255) aacaGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTc < 1:3019574/91‑1 (MQ=255) acaGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTTGTACGACTATCtatg < 1:638630/91‑4 (MQ=255) acaGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTcc > 1:2867433/1‑91 (MQ=255) caGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTTGTACGACTATCtatga < 1:2621828/91‑5 (MQ=39) caGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTccc < 2:1200009/91‑1 (MQ=255) aaTCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAAt < 1:2292798/91‑1 (MQ=255) aTCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAAtt > 2:1843113/1‑91 (MQ=255) aTCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAAtt > 2:2130547/1‑91 (MQ=255) cAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAAtttt < 1:3168068/91‑1 (MQ=255) cAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAAtttt < 1:1737085/91‑1 (MQ=255) cAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAAtttt < 1:1149847/91‑1 (MQ=255) cAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAAtttt > 1:574016/1‑91 (MQ=255) aaaTATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTa < 2:1675871/91‑1 (MQ=255) aaTATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAg > 1:3468297/1‑91 (MQ=255) aaTATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAg > 2:2938410/1‑91 (MQ=255) atatTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAgg > 1:2658729/1‑91 (MQ=255) tatTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGt > 2:237021/1‑91 (MQ=255) atTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTg < 1:1117679/91‑1 (MQ=255) ttGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTgg < 2:471803/91‑1 (MQ=255) ttGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTgg > 2:1728010/1‑91 (MQ=255) tGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGa > 1:33301/1‑91 (MQ=255) gATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAg > 2:711526/1‑91 (MQ=255) gATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAg > 2:2735426/1‑91 (MQ=255) atatCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAgg < 1:3540882/91‑1 (MQ=255) atatCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAgg < 2:3468734/91‑1 (MQ=255) atatCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAgg < 1:508691/91‑1 (MQ=255) tatCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAggg < 1:1084595/91‑1 (MQ=255) atCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAgggg > 1:2269811/1‑91 (MQ=255) atCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAgggg < 2:2167172/91‑1 (MQ=255) tCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGa < 1:1304144/91‑1 (MQ=255) cGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGaa < 1:3411423/91‑1 (MQ=255) cGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGaa < 2:3456911/91‑1 (MQ=255) aaTGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGAt < 2:1938243/91‑1 (MQ=255) aaTGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTCTAGGTGGAGGGGAAAGAt > 2:572018/1‑91 (MQ=255) aTGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGAt < 1:2949919/90‑1 (MQ=255) gTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAg > 2:1235683/1‑91 (MQ=255) gTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAg > 1:2261498/1‑91 (MQ=255) aGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTa > 1:1330223/1‑91 (MQ=255) gTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAg < 2:1499587/91‑1 (MQ=255) tATTCCCACCTGAAACCAGACAATTATTCATAGATAGTCGTACAACTATCTTTCCAATTTTAGGTGGAGGGGAAAGATTAGCTACATTAGt < 2:2778277/91‑1 (MQ=255) tATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGt > 2:1281727/1‑91 (MQ=255) tATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGt > 1:1459087/1‑91 (MQ=255) tATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGt > 2:3517709/1‑91 (MQ=255) tATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAA‑TTTAGGTGGAGGGGAAAGATTAGGTACATTAGTa < 2:2023853/91‑1 (MQ=255) tCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACt < 2:3358484/91‑1 (MQ=255) tCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACt < 1:1698221/91‑1 (MQ=255) tCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACt < 1:3504848/91‑1 (MQ=255) cccACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACtt > 1:989805/1‑91 (MQ=255) cccACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACtt > 1:2206407/1‑91 (MQ=255) ccACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTg > 2:1349490/1‑91 (MQ=255) ccACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTg > 1:2335767/1‑91 (MQ=255) ccACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTg > 2:1888028/1‑91 (MQ=255) ccACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTg > 1:1264226/1‑91 (MQ=255) cACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTgg < 1:278686/91‑1 (MQ=255) aCCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGt > 1:3179058/1‑91 (MQ=255) ccTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTc > 2:1737100/1‑91 (MQ=255) gAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAg < 1:2713727/91‑1 (MQ=255) gAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAg < 2:2832690/91‑1 (MQ=255) aaaaCAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGt < 1:1349490/91‑1 (MQ=255) aaCAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTAc > 1:3840672/1‑91 (MQ=255) aaCAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTAc > 1:1413366/1‑91 (MQ=255) aaCAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTAc > 2:794147/1‑91 (MQ=255) agagAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACatg > 1:2310591/1‑91 (MQ=255) gagaATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACatga > 2:410153/1‑91 (MQ=255) agaATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACatgat < 2:250894/91‑1 (MQ=255) aaTTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACAtgatga > 2:3586417/1‑91 (MQ=255) attattCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATgatgat < 1:1097880/91‑1 (MQ=255) ttCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTa > 2:2212075/1‑91 (MQ=255) ttCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTa > 1:667584/1‑91 (MQ=255) ttCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTa < 2:1559130/91‑1 (MQ=255) tCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTaa < 2:2615598/91‑1 (MQ=255) cATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAAt > 1:1830832/1‑91 (MQ=255) atagatagTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATg < 1:1459570/91‑1 (MQ=255) atagatagTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATg < 2:1686046/91‑1 (MQ=255) tagatagTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGa > 2:3757747/1‑91 (MQ=255) atagTTGTACGACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGaaaa > 1:3296674/1‑91 (MQ=255) atagTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGaaaa < 2:1322485/91‑1 (MQ=255) atagTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGaaaa > 2:1506791/1‑91 (MQ=255) tagTTGTACGACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAAt > 1:1378131/1‑91 (MQ=255) tagTTGTACGACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAAt > 2:2551631/1‑91 (MQ=255) tagTTGTACGACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAAt > 1:1056479/1‑91 (MQ=255) agTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATg < 2:1110963/91‑1 (MQ=255) gTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGa < 2:3865606/91‑1 (MQ=255) gTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGa < 1:1911457/91‑1 (MQ=255) cGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGAtt > 1:858012/1‑91 (MQ=255) | ATGGAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGATT > USA300TCH1516_ALE/1273835‑1274015 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |