| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,273,930 | A→G | 11.7% | T111T (ACA→ACG) | codY → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,273,930 | 0 | A | G | 11.7% | 580.9 / 57.2 | 212 | T111T (ACA→ACG) | codY | GTP‑sensing transcriptional pleiotropic repressor CodY |
| Reads supporting (aligned to +/- strand): ref base A (93/94); new base G (20/5); total (113/99) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.02e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01 | |||||||||||
Only 100 of 220 total aligned reads displayed.
AGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGATTTGGTA > USA300TCH1516_ALE/1273840‑1274020 | aGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACa < 2:484786/91‑1 (MQ=255)aGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACa < 2:3152491/91‑1 (MQ=255) aaacaaacAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTa > 2:2738640/1‑91 (MQ=255) aacaaacaGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACGAt < 1:3672100/91‑1 (MQ=255) acaaacaGAATCAAATATTGATATCGACAATGTATCAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTTGTACGACTATc < 1:3110550/91‑1 (MQ=255) aacaGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTc < 1:3019574/91‑1 (MQ=255) acaGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTcc > 1:2867433/1‑91 (MQ=255) caGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTccc < 2:1200009/91‑1 (MQ=255) gAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCaa > 1:614157/1‑91 (MQ=255) aaTCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAAt < 1:2292798/91‑1 (MQ=255) aTCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAAtt > 2:2130547/1‑91 (MQ=255) aTCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAAtt > 2:1843113/1‑91 (MQ=255) tCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAAttt > 2:1097880/1‑91 (MQ=255) cAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAAtttt < 1:1149847/91‑1 (MQ=255) cAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAAtttt < 1:3168068/91‑1 (MQ=255) cAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAAtttt < 2:56551/91‑1 (MQ=255) aaaTATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTa < 2:1675871/91‑1 (MQ=255) aaTATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAg > 1:2051183/1‑91 (MQ=255) tGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGa > 1:33301/1‑91 (MQ=255) gATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAg < 1:2684248/91‑1 (MQ=255) atatCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAgg < 2:3468693/91‑1 (MQ=255) atatCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAgg < 1:3540882/91‑1 (MQ=255) atatCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAgg < 1:389611/91‑1 (MQ=255) atatCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAgg < 1:508691/91‑1 (MQ=255) tatCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAggg > 1:1322485/1‑91 (MQ=255) atCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAgggg > 1:2269811/1‑91 (MQ=255) atCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAgggg < 2:2874430/91‑1 (MQ=255) atCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAgggg > 1:189504/1‑91 (MQ=255) atCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAgggg > 1:3830103/1‑91 (MQ=255) tCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGa < 1:3495495/91‑1 (MQ=255) aaTGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGAt < 2:1938377/91‑1 (MQ=255) aTGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAAGTATCTTCCCAATTTTAGGTGGAGGGGAAAGAtt > 1:3448982/1‑91 (MQ=255) aTGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGAt < 1:2949919/90‑1 (MQ=255) aTGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGAt > 2:2949919/1‑90 (MQ=255) gTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAg > 2:1730088/1‑91 (MQ=255) gTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAg > 2:1235683/1‑91 (MQ=255) tAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTAc > 2:1322360/1‑91 (MQ=255) aaCAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACa > 1:923952/1‑91 (MQ=255) cAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACAtt < 1:1088036/91‑1 (MQ=255) gTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAg < 2:3546964/91‑1 (MQ=255) gTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAg > 1:642815/1‑91 (MQ=255) tATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGt > 1:1459087/1‑91 (MQ=255) tATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGt > 2:3517709/1‑91 (MQ=255) tATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGt > 2:3757455/1‑91 (MQ=255) aTTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTa < 2:794766/91‑1 (MQ=255) ttCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTAc < 1:1117085/91‑1 (MQ=255) ttCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTAc > 1:779147/1‑91 (MQ=255) tCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACt < 2:2456245/91‑1 (MQ=255) tCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACt < 1:1698221/91‑1 (MQ=255) cccACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACtt > 1:989805/1‑91 (MQ=255) cccACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACtt > 1:591021/1‑91 (MQ=255) cccACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACtt > 1:2206407/1‑91 (MQ=255) cccACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACtt < 1:1286217/91‑1 (MQ=255) ccACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTg > 2:2205257/1‑91 (MQ=255) ccACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTg > 1:2335767/1‑91 (MQ=255) ccACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTg > 2:1888028/1‑91 (MQ=255) cACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTgg > 1:2638973/1‑91 (MQ=255) cACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTgg < 1:278686/91‑1 (MQ=255) aCCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGt > 1:3179058/1‑91 (MQ=255) gAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAg < 2:2832690/91‑1 (MQ=255) gAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAg < 1:2713727/91‑1 (MQ=255) aaaaCAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGt < 1:1349490/91‑1 (MQ=255) aaCAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTAc > 1:1413366/1‑91 (MQ=255) aCAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACa > 2:136923/1‑91 (MQ=255) agagAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACatg > 1:2310591/1‑91 (MQ=255) gagaATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACatga > 2:410191/1‑91 (MQ=255) attattCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATgatgat < 1:1097880/91‑1 (MQ=255) attCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGAtttt < 2:1933978/91‑1 (MQ=255) ttCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTa < 2:1558631/91‑1 (MQ=255) ttCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTa > 2:3421095/1‑91 (MQ=255) ttCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTa > 2:694067/1‑91 (MQ=255) tCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTaa < 2:2615598/91‑1 (MQ=255) gaagatagTTGTACGACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATg > 2:215148/3‑91 (MQ=255) atagatagTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATg < 2:1686046/91‑1 (MQ=255) atagatagTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATg < 1:1459570/91‑1 (MQ=255) atagatagTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATg < 2:3775494/91‑1 (MQ=255) atagTTGTACGACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGaaaa > 1:3296674/1‑91 (MQ=255) atagTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGaaaa > 2:1506791/1‑91 (MQ=255) atagTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGaaaa < 2:779147/91‑1 (MQ=255) tagTTGTACGACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAAt > 1:1378131/1‑91 (MQ=255) tagTTGTACGACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAAt > 1:1057982/1‑91 (MQ=255) tagTTGTACGACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAAt > 2:2551631/1‑91 (MQ=255) gttgTACGACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGa > 2:3051601/4‑91 (MQ=255) gttgTACGACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGa > 1:2492526/4‑91 (MQ=255) gTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGa < 2:1334479/91‑1 (MQ=255) gTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGa < 2:3865836/91‑1 (MQ=255) gTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGa > 2:2330657/1‑91 (MQ=255) ttgTACGACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGAt > 2:2728818/3‑91 (MQ=255) tgTACGACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGAtt > 2:3322039/2‑91 (MQ=255) cGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGAtt > 1:1771052/1‑91 (MQ=255) gTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGAttt < 1:2212075/91‑1 (MQ=255) tACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTTGAGTACATGATGATTTTAATGAAAATGATTTg < 2:3803296/91‑1 (MQ=255) tACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGATTTg > 2:1580044/1‑91 (MQ=255) tACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGATTTg > 1:1026509/1‑91 (MQ=255) aCAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGATTTgg > 1:1180113/1‑91 (MQ=255) aCAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGATTTgg < 2:1137143/91‑1 (MQ=255) cAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGATTTGGt > 2:2059081/1‑91 (MQ=255) cAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGATTTGGt < 1:3510522/91‑1 (MQ=255) aaCTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGATTTGGTa > 2:1717294/1‑91 (MQ=255) aaCTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGATTTGGTa < 2:2650514/91‑1 (MQ=255) | AGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCATAGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATGATTTTAATGAAAATGATTTGGTA > USA300TCH1516_ALE/1273840‑1274020 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |