| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,653,327 | A→G | 8.8% | intergenic (‑32/+127) | gcvT ← / ← aroK | Aminomethyltransferase/Shikimate kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,653,327 | 0 | A | G | 8.8% | 600.2 / 37.1 | 205 | intergenic (‑32/+127) | gcvT/aroK | Aminomethyltransferase/Shikimate kinase |
| Reads supporting (aligned to +/- strand): ref base A (80/106); new base G (8/10); total (89/116) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.59e-01 | |||||||||||
Only 100 of 210 total aligned reads displayed.
TTGCACCTCTATCAACATAATTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGTAATAAATTACTTG > USA300TCH1516_ALE/1653238‑1653417 | ttGCACCTCTATCAACATAATTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGAt < 2:754869/91‑1 (MQ=255) tGCACCTCTATCAACATAATTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATa > 1:1988861/1‑91 (MQ=255) aCCTCTATCAACATAATTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCa > 1:1076796/1‑91 (MQ=255) aaCATAATTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGGTAGCGATTGCTatc < 2:744659/91‑3 (MQ=255) aaCATAATTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGGTAGCGATTGCTatc < 1:2881830/91‑3 (MQ=255) aaCATAATTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGGTAGCGATTGCTatc < 1:1797288/91‑3 (MQ=255) cATAATTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCt < 1:2855836/91‑1 (MQ=255) cATAATTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCt < 1:1250349/91‑1 (MQ=255) cATAATTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCt < 1:2855938/91‑1 (MQ=255) aTAATTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTg < 1:728596/91‑1 (MQ=255) aTAATTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTg < 1:2691721/91‑1 (MQ=255) aTTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGGTAGCGATTGCTATCCTGttt < 1:2392659/91‑1 (MQ=38) aTTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGttt > 2:1749841/1‑91 (MQ=255) aTTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGttt < 1:3665012/91‑1 (MQ=255) aTTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGttt < 1:2343081/91‑1 (MQ=255) aTTGTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGttt < 1:3134727/91‑1 (MQ=255) ttttGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGGTAGCGATTGCTATCCTGtttt < 2:416652/91‑2 (MQ=37) ttttGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATGATAAAAACAGGATAGCAATCGCTACCCTGTTta > 1:3180012/1‑91 (MQ=255) tttGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGGTAGCGATTGCTATCCTGttttt < 2:45115/91‑3 (MQ=37) ttGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTtata > 1:3058110/1‑91 (MQ=255) tGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATaa > 1:2990009/1‑91 (MQ=255) tGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATaa > 2:1919316/1‑91 (MQ=255) tGATATAAAGGTGTTTGTTATAAATCACTTGGCATTGAAATACCCCCTTAAAATTATAAAAACAGGGTAGCGATTGCTATCCTGTTtttat < 2:2600321/91‑2 (MQ=21) gATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATaaa < 1:2135402/91‑1 (MQ=255) atatAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAAt < 1:2814374/91‑1 (MQ=255) tataAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATc > 2:3235170/1‑91 (MQ=255) tataAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATc < 2:2277439/91‑1 (MQ=255) ataAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCa < 1:1207389/91‑1 (MQ=255) taAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCAc < 1:2564777/91‑1 (MQ=255) gtttgtttTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCa > 2:3074127/1‑91 (MQ=255) tgtttTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTAGTCTGTTTATAAATCACCAATTCAGGa > 2:3354732/1‑91 (MQ=255) tgtttTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGa < 1:1842948/91‑1 (MQ=255) gtttTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGaa > 1:2781441/1‑91 (MQ=255) gtttTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGaa < 2:320320/91‑1 (MQ=255) ttAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAAcgc > 2:797119/1‑91 (MQ=255) tAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAAcgcg > 1:3299578/1‑91 (MQ=255) aaaTCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGt < 1:16156/91‑1 (MQ=255) tCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTAc < 1:3534964/91‑1 (MQ=255) tCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTAc < 1:1470432/91‑1 (MQ=255) tCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTAc < 2:1857034/91‑1 (MQ=255) cACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACa > 2:2359940/1‑91 (MQ=255) cACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACa > 1:3547591/1‑91 (MQ=255) cTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGt < 1:3401468/91‑1 (MQ=255) tGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGtat < 2:143650/91‑1 (MQ=255) tGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGtat < 1:2423866/91‑1 (MQ=255) gACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGtatt < 1:2063322/91‑1 (MQ=255) gACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGtatt > 1:434129/1‑91 (MQ=255) aCATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGtatta < 2:710712/91‑1 (MQ=255) aCATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAAGTCAGGAACGCGTTACAGtatta > 2:2947329/1‑91 (MQ=255) cATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGtattat < 2:2936010/91‑1 (MQ=255) cATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGtattat > 2:657800/1‑91 (MQ=255) aTTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATc < 2:2156268/91‑1 (MQ=255) aTTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATc < 1:1308702/91‑1 (MQ=255) tGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCt < 1:526984/91‑1 (MQ=255) tGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCt < 1:1752070/91‑1 (MQ=255) aaaTACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCttt < 2:3451724/91‑1 (MQ=255) aTACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTg > 1:2549146/1‑91 (MQ=255) ccccccTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTAcc > 2:3705507/2‑91 (MQ=255) aCCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGcc > 1:379489/1‑91 (MQ=255) cccccTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCt > 2:1881392/1‑91 (MQ=255) cccccTTAAAATTATAAAAACAGGATAGCAATAGCTACAATCTTTATAAATCACCAATTGATGAACGCGTTACAGTATTATCCTTTTGCCt > 2:2414271/1‑91 (MQ=255) ccccTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTg < 2:2781441/91‑1 (MQ=255) ccccTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTg < 1:808405/91‑1 (MQ=255) ccccTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTg > 2:1807171/1‑91 (MQ=255) ccccTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTg < 1:134164/91‑1 (MQ=255) ccccTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTg < 1:1298946/91‑1 (MQ=255) ccccTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTg < 1:1298476/91‑1 (MQ=255) cTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTgaga < 1:2142837/91‑1 (MQ=255) ttAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGagag < 2:3027661/91‑1 (MQ=255) tAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTACCCTTTTGCCTGAGAGt > 2:1445004/1‑91 (MQ=255) aaaTTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGttt < 2:386545/91‑1 (MQ=255) aaaTTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGttt < 1:2332125/91‑1 (MQ=255) aaaTTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGttt < 1:1733762/91‑1 (MQ=255) aaaTTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGttt > 1:2780774/1‑91 (MQ=255) aaTTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTc < 1:843805/91‑1 (MQ=255) aTTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGACAGTTTCg > 2:3442741/1‑91 (MQ=255) ttATAAAAACAGGATAGCCATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGt < 1:2521752/91‑1 (MQ=255) ttATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGt > 1:630409/1‑91 (MQ=255) ttATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGt > 1:1453535/1‑91 (MQ=255) tataAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGta < 1:3169070/91‑1 (MQ=255) ataAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGtaa > 2:1660647/1‑91 (MQ=255) ataAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGtaa > 1:1698498/1‑91 (MQ=255) ataAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGtaa > 1:1275693/1‑91 (MQ=255) taAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGtaat > 1:1009392/1‑91 (MQ=255) taAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGtaat > 1:897482/1‑91 (MQ=255) aaaaaCAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGtaata < 2:2555886/91‑1 (MQ=255) taaaCAGGGTAGCGATTGCTATCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGtaataa > 2:2516290/2‑91 (MQ=37) aaaaCAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGtaataa < 2:1133919/91‑1 (MQ=255) aaCAGGGTAGCGATTGCTATCCTGTTTATAAATCACCAATTCAGGCACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGTAATAAAt > 2:2164945/1‑91 (MQ=37) aaCAGGGTAGCGATTGCTATCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGTAATAAAt > 1:3579694/1‑91 (MQ=38) aaCAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGTAATAAAt < 1:1359989/91‑1 (MQ=255) aaCAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGTAATAAAt < 2:10207/91‑1 (MQ=255) aCAGGGTAGCGATTGCTATCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGTAATAAAtt < 2:216851/91‑1 (MQ=38) aCAGGGTAGCGATTGCTATCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGTAATAAAtt > 1:777805/1‑91 (MQ=38) cAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGTAATAAATTa > 1:1912169/1‑91 (MQ=255) cAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGTAATAAATTa < 2:1564755/91‑1 (MQ=255) ggATAGCAATCGCTACCCTGTTTATAAATCACCAGTGCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGTAATAAATTACt < 2:149733/91‑1 (MQ=255) gATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGTAATAAATTACtt > 2:2093267/1‑91 (MQ=255) aTAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGTAATAAATTACTTg < 2:1250370/91‑1 (MQ=255) aTAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGTAATAAATTACTTg < 2:900672/91‑1 (MQ=255) | TTGCACCTCTATCAACATAATTTTGATATAAAGGTGTTTGTTTTAAATCACTTGACATTGAAATACCCCCTTAAAATTATAAAAACAGGATAGCAATCGCTACCCTGTTTATAAATCACCAATTCAGGAACGCGTTACAGTATTATCCTTTTGCCTGAGAGTTTCGTAATAAATTACTTG > USA300TCH1516_ALE/1653238‑1653417 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |