| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,695,087 | C→T | 6.0% | intergenic (‑293/+237) | hemN_1 ← / ← lepA | Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR/Elongation factor 4 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,695,087 | 0 | C | T | 6.0% | 790.1 / 23.0 | 241 | intergenic (‑293/+237) | hemN_1/lepA | Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR/Elongation factor 4 |
| Reads supporting (aligned to +/- strand): ref base C (108/118); new base T (9/6); total (117/124) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 246 total aligned reads displayed.
ATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTT > USA300TCH1516_ALE/1694997‑1695177 | tACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCt > 1:3349651/1‑91 (MQ=255) tACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCt < 1:1898906/91‑1 (MQ=255) aCATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTg > 2:2508267/1‑91 (MQ=255) aCATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTg > 1:1582721/1‑91 (MQ=255) cATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGt > 1:2840801/1‑91 (MQ=255) aTGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTa > 2:3877593‑M2/1‑90 (MQ=255) gAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTaga > 1:481567‑M2/1‑88 (MQ=255) gTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAAt < 2:466524/91‑1 (MQ=255) gTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAAt > 2:1375879/1‑91 (MQ=255) tAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAAtt < 1:3416729/91‑1 (MQ=255) tttaCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAAttt > 1:945121/4‑91 (MQ=255) aaaaCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAAttt > 1:2713880/1‑91 (MQ=255) aaaaCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCAATGCCTGTAGAAttt > 1:2714392/1‑91 (MQ=255) taCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCt > 2:2098618/2‑91 (MQ=255) taCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCt > 1:1028836/2‑91 (MQ=255) aCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCtt < 1:1765542/91‑1 (MQ=255) aCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCtt < 2:541655/91‑1 (MQ=255) aCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCtt > 2:3257335/1‑91 (MQ=255) tCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCtttt > 1:991019/1‑91 (MQ=255) cATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTc < 2:83003/91‑1 (MQ=255) cATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTc > 1:1518971/1‑91 (MQ=255) cATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTc < 2:18113/91‑1 (MQ=255) cATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTc < 2:648694/91‑1 (MQ=255) aTGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCg < 2:3293066/91‑1 (MQ=255) aTGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCg > 1:1034950/1‑91 (MQ=255) aTGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCg > 2:2853012/1‑91 (MQ=255) aTGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCg > 2:1863188/1‑91 (MQ=255) aTGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCg < 2:2093960/91‑1 (MQ=255) gatgggagtGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTagaaattggattcccaatt > 2:1566931‑M2/4‑72 (MQ=255) aGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATtct > 1:205523/1‑91 (MQ=255) aGGGAGTGGGACAGAAATGATATTATCGGAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTagaaattggattcccaatttc > 1:1557687‑M2/1‑70 (MQ=255) gggAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTagaaattggattcccaatttct > 1:73793‑M2/1‑69 (MQ=255) gAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTa < 1:3797869/91‑1 (MQ=255) gTGGGACTGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATg < 1:1950261/91‑1 (MQ=255) gTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATg > 2:2095200/1‑91 (MQ=255) gTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATg > 2:2262998/1‑91 (MQ=255) gTGGGACAGAAATGATATTTTCGCAAAATCTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATg < 2:3672252/91‑1 (MQ=255) tGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGt > 2:922378/1‑91 (MQ=255) gggACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGGATTTCTTTTCGAAATTCTCTATGtt < 2:2840801/91‑1 (MQ=255) gggACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGtt < 1:1110707/91‑1 (MQ=255) ggACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCGCACCCCAACTTGCGTTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTg < 1:3612864/91‑1 (MQ=255) ggACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTg < 1:3656687/91‑1 (MQ=255) ggACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTg > 2:616145/1‑91 (MQ=255) gACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTgg < 1:1279115/91‑1 (MQ=255) gACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTgg > 1:2553380/1‑91 (MQ=255) gACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTgg < 1:2453456/91‑1 (MQ=255) cAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTgggg > 2:1120271/1‑91 (MQ=255) cAGAAATCATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTCGCATTGCCTGTAGAATTTGCTTTCGAACGTCTCTATGTTgggg > 2:3612864/1‑91 (MQ=14) aaaTGATATTTTCGCAAGATGTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccc < 2:121457/91‑1 (MQ=255) aaaTGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccc < 2:71618/91‑1 (MQ=255) tGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCtttt < 2:3502372/65‑1 (MQ=255) gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccccacc > 2:1268804/1‑91 (MQ=255) gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccccacc > 2:2380695/1‑91 (MQ=255) atatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccccaccc > 1:3731112/1‑91 (MQ=255) atatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccccaccc > 1:3121443/1‑91 (MQ=255) tatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccccacccc < 1:2217364/91‑1 (MQ=255) tatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccccacccc < 2:3205308/91‑1 (MQ=255) ttttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGGATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCaa < 2:3181482/91‑1 (MQ=255) tttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAAc > 2:1309532/1‑91 (MQ=255) ttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACt > 2:302900/1‑91 (MQ=255) ttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACt < 1:2090291/91‑1 (MQ=255) cGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTg < 2:3544320/91‑1 (MQ=255) cGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTg > 2:2057342/1‑91 (MQ=255) gCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGc < 1:2964211/91‑1 (MQ=255) aaaTTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGcaca < 2:2439526/91‑1 (MQ=255) aaTTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACAt > 1:3843437/1‑91 (MQ=255) atttatttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACAtt < 1:2436576/91‑1 (MQ=255) tttatttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATta < 2:814048/91‑1 (MQ=255) atttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAg < 2:7988/91‑1 (MQ=255) atttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAg > 1:829604/1‑91 (MQ=255) atttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAg < 1:1166791/91‑1 (MQ=255) ttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTa > 1:595790/1‑91 (MQ=255) tcgtcgTCCCACCCCAACTTGCATTGTCTGTagaaattgggaatccaatttctacagacaatgcaagttggggtgggacgacgaaataaat < 1:1032747‑M2/91‑61 (MQ=255) cgtcgtCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAg > 1:214949/1‑91 (MQ=255) cgtcgtCCCACCCCAACTTGCATTGCCTGTAGAATCTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAg > 1:2107347/1‑91 (MQ=255) gtcgtcCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGc > 1:937396/1‑91 (MQ=255) tcCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGAc < 2:2190643/91‑1 (MQ=255) cccACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACt > 1:2771168/1‑91 (MQ=255) ccACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACtt > 2:2680005/1‑91 (MQ=255) ccACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGATGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACtt > 2:3406047/1‑91 (MQ=255) aaCTTGCATTGTCTGTagaaattgggaatccaatttctacagacaatgcaagttggggtgggacgacgaaataaattttgcgaaaatatca < 2:1822705‑M2/91‑76 (MQ=255) aaCTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCa > 1:2499973/1‑91 (MQ=255) aCTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAg > 2:2256636/1‑91 (MQ=255) cTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGc > 2:3339490/1‑91 (MQ=255) ttGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCt < 1:1483311/91‑1 (MQ=255) ttGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCt < 2:3796260/91‑1 (MQ=255) tGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCtt > 2:2605434/1‑91 (MQ=255) tGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCtt > 2:863037/1‑91 (MQ=255) gCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTc > 2:1438332/1‑91 (MQ=255) aTTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtg < 2:2939361/91‑1 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgt < 1:2314134/91‑1 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgt > 1:1263610/1‑91 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgt < 1:2860939/91‑1 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgt > 1:3435218/1‑91 (MQ=255) ttGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgt < 2:1778260/91‑1 (MQ=255) tGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgtg < 2:3723757/91‑1 (MQ=255) tGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgtg < 1:32666/91‑1 (MQ=255) tGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgtg < 1:3864399/91‑1 (MQ=255) tGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgtg > 1:850199/1‑91 (MQ=255) gCCTGTAGAATTTCTTGTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTgtgt < 2:2974632/91‑1 (MQ=255) | ATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTT > USA300TCH1516_ALE/1694997‑1695177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |