Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 1,702,671 G→C 7.1% I117M (ATC→ATG tylM1 ← dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE1,702,6710GC 7.1% 678.6 / 33.2 197I117M (ATC→ATGtylM1dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase
Reads supporting (aligned to +/- strand):  ref base G (105/78);  new base C (4/10);  total (109/88)
Fisher's exact test for biased strand distribution p-value = 5.00e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.00e-01

Only 100 of 221 total aligned reads displayed.

ACTTTGATTATTAAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCAAATCA  >  USA300TCH1516_ALE/1702581‑1702761
                                                                                          |                                                                                          
aCTTTGATTATTAAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATtg                                                                                            <  2:2981945/91‑1 (MQ=255)
aCTTTGATTATTAAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATtg                                                                                            >  1:3631988/1‑91 (MQ=255)
     gATTATTAAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGaa                                                                                       <  2:1374555/91‑1 (MQ=255)
       ttattaAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTCATCAATg                                                                                     <  1:1304497/91‑1 (MQ=255)
         attaAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGtt                                                                                   >  2:965633/1‑91 (MQ=255)
         attaAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTCATCAATGtt                                                                                   <  1:2692091/91‑1 (MQ=255)
          ttaAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGttt                                                                                  <  2:1884169/91‑1 (MQ=255)
           taAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTc                                                                                 >  2:1307876/1‑91 (MQ=255)
           taAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTc                                                                                 <  2:3333287/91‑1 (MQ=255)
            aaaCAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCa                                                                                <  2:2321226/91‑1 (MQ=255)
                 aaGTCATCATTTTATAGACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCAc                                                                           <  2:3705334/91‑1 (MQ=255)
                 aaGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCAc                                                                           <  1:1676335/91‑1 (MQ=255)
                  aGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACt                                                                          >  1:599758/1‑91 (MQ=255)
                  aGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACt                                                                          >  1:3216711/1‑91 (MQ=255)
                    tcatcaTTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGc                                                                        >  2:2547605/1‑91 (MQ=255)
                      atcatTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGtt                                                                                   <  1:2248613/78‑1 (MQ=255)
                      atcatTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAg                                                                      >  2:1953010/1‑91 (MQ=255)
                      atcatTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAg                                                                      <  2:425126/91‑1 (MQ=255)
                      atcatTATATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAg                                                                      >  1:3016162/1‑91 (MQ=255)
                       tcatTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGt                                                                     >  2:2870919/1‑91 (MQ=255)
                       tcatTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGt                                                                     >  2:1097226/1‑91 (MQ=255)
                        catTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATTATGATAAACATTGATGAATGTTTCAATCACTGCAGtt                                                                    <  1:3276691/91‑1 (MQ=255)
                        catTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGtt                                                                    >  2:3793021/1‑91 (MQ=255)
                         atTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGttt                                                                   >  2:3883204/1‑91 (MQ=255)
                          ttttATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTc                                                                  >  1:3107849/1‑91 (MQ=255)
                              ataAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCt                                                              <  1:280855/91‑1 (MQ=255)
                               taAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCtt                                                             >  2:1799451/1‑91 (MQ=255)
                               taAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCtt                                                             >  2:2647724/1‑91 (MQ=255)
                                aaaCAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTg                                                            <  2:1528042/91‑1 (MQ=255)
                                  aCAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCa                                                          >  1:2531158/1‑91 (MQ=255)
                                  aCAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCa                                                          <  1:2147598/91‑1 (MQ=255)
                                   cAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCaa                                                         >  2:923752/1‑91 (MQ=255)
                                   cAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCaa                                                         >  2:1801059/1‑91 (MQ=255)
                                    aGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCaaa                                                        <  2:1233559/91‑1 (MQ=255)
                                    aGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCaaa                                                        <  1:898114/91‑1 (MQ=255)
                                    aGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCaaa                                                        >  2:3401493/1‑91 (MQ=255)
                                    aGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTGCAATCACTGCAGTTTCATCTTGCaaa                                                        <  2:2209104/91‑1 (MQ=255)
                                      tATGTACATCAAAAATAAATACACCTGAATCGGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAaata                                                      <  1:3533218/91‑1 (MQ=255)
                                      tATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAaata                                                      >  2:3572617/1‑91 (MQ=255)
                                      tATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAaata                                                      >  1:1444227/1‑91 (MQ=255)
                                       aTGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAaataa                                                     <  1:244996/91‑1 (MQ=255)
                                        tGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAaataat                                                    <  1:1125359/91‑1 (MQ=255)
                                          tACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAAttt                                                  <  1:2227409/91‑1 (MQ=255)
                                          tACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAAttt                                                  <  2:3016162/91‑1 (MQ=255)
                                           aCATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTa                                                 >  1:1326361/1‑91 (MQ=255)
                                            cATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTag                                                <  2:947409/91‑1 (MQ=255)
                                            cATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTCATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTag                                                >  1:3078227/1‑91 (MQ=255)
                                              tCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTagag                                              <  1:1217401/91‑1 (MQ=255)
                                                  aaataaatACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTc                                          >  2:2130178/1‑91 (MQ=255)
                                                  aaataaatACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTc                                          >  1:1825538/1‑91 (MQ=255)
                                                    ataaataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTcac                                        <  1:196575/91‑1 (MQ=255)
                                                     taaataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTcaca                                       <  1:2647724/91‑1 (MQ=255)
                                                     taaataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTcaca                                       >  2:3091173/1‑91 (MQ=255)
                                                     taaataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTcaca                                       <  2:3309483/91‑1 (MQ=255)
                                                     taaataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTcaca                                       <  1:1799679/91‑1 (MQ=255)
                                                      aaataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaa                                      >  1:534417/1‑91 (MQ=255)
                                                      aaataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaa                                      <  2:1782236/91‑1 (MQ=255)
                                                      aaataCACCTGAATCAGTCAGATGATGATAAACATTGATGAAAGTTTCAATCACTGCAGTTTCATCTTCCAAATAATTTAGAGCGTCACaa                                      >  2:304215/1‑91 (MQ=255)
                                                       aataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaa                                     >  2:14396/1‑91 (MQ=255)
                                                       aataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaa                                     <  1:1560601/91‑1 (MQ=255)
                                                        ataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaaa                                    <  2:3322128/91‑1 (MQ=255)
                                                        ataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaaa                                    >  1:87393/1‑91 (MQ=255)
                                                        ataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaaa                                    >  2:1183366/1‑91 (MQ=255)
                                                         taCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaaaa                                   >  2:1576233/1‑91 (MQ=255)
                                                         taCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaaaa                                   <  1:432367/91‑1 (MQ=255)
                                                         taCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaaaa                                   >  2:1928126/1‑91 (MQ=255)
                                                          acacCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaaaaa                                  >  2:1020158/1‑91 (MQ=255)
                                                           cacCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAAt                                 >  1:1277236/1‑91 (MQ=255)
                                                                 aaTCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGtgat                           >  2:2372621/1‑91 (MQ=255)
                                                                 aaTCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGtgat                           >  2:1639945/1‑91 (MQ=255)
                                                                 aaTCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGtgat                           >  1:3841571/1‑91 (MQ=255)
                                                                  aTCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGtgatg                          <  1:1412768/91‑1 (MQ=255)
                                                                    cagtcagATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAAACACAAAAAATAGTgatgat                        <  2:2034999/91‑1 (MQ=255)
                                                                     agtcagATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGata                       >  2:580422/1‑91 (MQ=255)
                                                                     agtcagATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGata                       >  1:3066777/1‑91 (MQ=255)
                                                                     agtcagATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCACCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGata                       >  2:3553651/1‑91 (MQ=255)
                                                                       tcagATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATc                     <  1:2593620/91‑1 (MQ=255)
                                                                        cagATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCa                    <  2:792927/91‑1 (MQ=255)
                                                                           atgatgatAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAt                 <  2:671841/91‑1 (MQ=255)
                                                                              atgatAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgt              <  2:1662255/91‑1 (MQ=255)
                                                                               tgatAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgtt             >  1:1546425/1‑91 (MQ=255)
                                                                               tgatAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgtt             >  2:3275285/1‑91 (MQ=255)
                                                                               attgaaaCATTCATCAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgtt             >  1:2993987/5‑91 (MQ=255)
                                                                                gatAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgttg            <  1:2933704/91‑1 (MQ=255)
                                                                                gatAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgttg            >  2:3114349/1‑91 (MQ=255)
                                                                                 atAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgttgt           >  1:2291985/1‑91 (MQ=255)
                                                                                  tAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgttgtt          <  1:2579670/91‑1 (MQ=255)
                                                                                  tAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgttgtt          >  2:2776985/1‑91 (MQ=255)
                                                                                  gaaaCATTCATCAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgttgtt          >  1:2855585/2‑91 (MQ=255)
                                                                                   aaaCATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAAGAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgttgttg         <  2:3485755/91‑1 (MQ=255)
                                                                                    aaCATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGc        >  2:1498146/1‑91 (MQ=255)
                                                                                     aCATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCa       >  1:3376348/1‑91 (MQ=255)
                                                                                     aCATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAATAGTGATGATATCAAATTGTTGTTGCaa      <  2:1252363/91‑1 (MQ=255)
                                                                                         tgatgaCTGTTTCAATCACTGCAGTTTCATCTTGCAAATACTTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCAACTc   >  2:489638/1‑91 (MQ=255)
                                                                                         tgatgaATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCAAATc   >  1:1789738/1‑91 (MQ=255)
                                                                                          gatgaATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCAAATCa  >  1:734174/1‑91 (MQ=255)
                                                                                          gatgaATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCAAATCa  <  2:3376285/91‑1 (MQ=255)
                                                                                          gatgaATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCAAATCa  <  1:1482465/91‑1 (MQ=255)
                                                                                          gatgaATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCAAATCa  <  1:2130178/91‑1 (MQ=255)
                                                                                          gatgaATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCAAATCa  <  2:3138013/91‑1 (MQ=255)
                                                                                          |                                                                                          
ACTTTGATTATTAAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCAAATCA  >  USA300TCH1516_ALE/1702581‑1702761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: