Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | USA300TCH1516_ALE | 1,702,674 | G→C | 6.1% | F116L (TTC→TTG) | tylM1 ← | dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 1,702,674 | 0 | G | C | 6.1% | 691.8 / 28.3 | 197 | F116L (TTC→TTG) | tylM1 | dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase |
Reads supporting (aligned to +/- strand): ref base G (107/78); new base C (2/10); total (109/88) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.59e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.19e-01 |
Only 100 of 216 total aligned reads displayed.
TTGATTATTAAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCAAATCAAA > USA300TCH1516_ALE/1702584‑1702763 | ttGATTATTAAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATtgatg > 1:387689/1‑91 (MQ=255) tGATTATTAAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATtgatga < 2:2704767/91‑1 (MQ=255) gATTATTAAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGGCAGATGATGATAAACATTGATGaa < 1:1558598/91‑1 (MQ=255) attaAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGtt > 2:965633/1‑91 (MQ=255) attaAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGtt > 2:3044336/1‑91 (MQ=255) attaAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTCATCAATGtt < 1:3129960/91‑1 (MQ=255) attaAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTCATCAATGtt < 1:2692078/91‑1 (MQ=255) ttaAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGttt < 1:1399832/91‑1 (MQ=255) ttaAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTCATCAATGttt < 1:1237950/91‑1 (MQ=255) ttaAACAAAGTCATCATTTTATAAACAGTATATACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGttt < 2:1884300/91‑1 (MQ=255) taAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTc > 2:1307876/1‑91 (MQ=255) taAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTc < 2:1561515/91‑1 (MQ=255) taAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTc < 2:3333287/91‑1 (MQ=255) cAAAGTCATCATTTTATAAGCAGCATGTACATCAAAAATAAATACACCTGAATCAGTCAGATCATGATAAAGATTGGTGAATGTTTCAATc < 2:1159338/91‑1 (MQ=255) aaaGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATcg > 2:3852490/1‑90 (MQ=255) aaGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCAc < 1:1676335/91‑1 (MQ=255) aGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACt > 1:3216711/1‑91 (MQ=255) aGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACt > 2:2194509/1‑91 (MQ=255) aGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACt > 2:3285397/1‑91 (MQ=255) tcatcaTTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGc > 2:2547605/1‑91 (MQ=255) catcatTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCa > 1:3542081/1‑91 (MQ=255) atcatTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGtt > 2:2248613/1‑78 (MQ=255) atcatTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAg > 2:1953010/1‑91 (MQ=255) atcatTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAg < 2:425126/91‑1 (MQ=255) tcatTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGt > 2:2870919/1‑91 (MQ=255) tcatTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGt > 2:1097226/1‑91 (MQ=255) tcatTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGt < 1:1563578/91‑1 (MQ=255) catTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATTATGATAAACATTGATGAATGTTTCAATCACTGCAGtt < 1:3276691/91‑1 (MQ=255) atTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGttt > 2:3883204/1‑91 (MQ=255) ttttATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTc > 1:3107849/1‑91 (MQ=255) tttATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCa > 2:726743/1‑91 (MQ=255) taAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCtt > 2:1799451/1‑91 (MQ=255) taAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCtt > 1:1768629/1‑91 (MQ=255) taAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCtt > 2:2647724/1‑91 (MQ=255) taAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTATCATCtt > 2:3441893/1‑91 (MQ=255) aCAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCa > 1:2531386/1‑91 (MQ=255) aCAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCa > 1:2247023/1‑91 (MQ=255) cAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCaa > 2:1801059/1‑91 (MQ=255) cAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCaa > 2:923752/1‑91 (MQ=255) aGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCaaa < 1:898114/91‑1 (MQ=255) gTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAaat > 1:2961390/1‑91 (MQ=255) tATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAaata > 1:1444227/1‑91 (MQ=255) tGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAaataat < 1:1125359/91‑1 (MQ=255) tACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAAttt < 1:3794118/91‑1 (MQ=255) aCATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTa > 2:2321519/1‑91 (MQ=255) aCATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTa < 2:580714/91‑1 (MQ=255) aCATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTa > 2:3019770/1‑91 (MQ=255) cATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTag < 2:947409/91‑1 (MQ=255) cATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTCATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTag > 1:3078227/1‑91 (MQ=255) aTCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTaga < 1:1506382/91‑1 (MQ=255) aaataaatACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTc > 2:2130178/1‑91 (MQ=255) aaataaatACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTc > 1:1825538/1‑91 (MQ=255) aataaataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTca > 2:1820180/1‑91 (MQ=255) ataaataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCa < 1:300320/73‑1 (MQ=255) ataaataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTcac < 1:196575/91‑1 (MQ=255) ataaataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTcac > 2:1193267/1‑91 (MQ=255) taaataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTcaca > 2:3091173/1‑91 (MQ=255) taaataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTcaca < 1:1799451/91‑1 (MQ=255) aaataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaa < 2:1782236/91‑1 (MQ=255) aataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaa > 1:128184/1‑91 (MQ=255) aataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaa > 2:14396/1‑91 (MQ=255) aataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaa > 1:455228/1‑91 (MQ=255) aataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaa > 1:2772474/1‑91 (MQ=255) ataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaaa > 2:2813832/1‑91 (MQ=255) ataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaaa > 1:87393/1‑91 (MQ=255) ataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaaa < 2:3322128/91‑1 (MQ=255) ataCACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaaa < 2:1396912/91‑1 (MQ=255) acacCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaaaaa > 2:1020158/1‑91 (MQ=255) acacCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACaaaa > 1:2103223/1‑89 (MQ=255) cacCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAAt > 1:561484/1‑91 (MQ=255) ccTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAg > 1:2902939/1‑91 (MQ=255) ccTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAg < 1:1307876/91‑1 (MQ=255) tGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGtg < 2:1638252/91‑1 (MQ=255) tGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAATCAAAAAAAATAGtg < 2:3590830/91‑1 (MQ=255) aTCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGtgatg < 1:1412768/91‑1 (MQ=255) cagtcagATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAAACACAAAAAATAGTgatgat < 2:2034999/91‑1 (MQ=255) agtcagATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGata > 1:712265/1‑91 (MQ=255) agtcagATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGata > 1:3066721/1‑91 (MQ=255) agtcagATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCACCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGata > 2:3553651/1‑91 (MQ=255) agtcagATGATGATAAACATTGATGAATGTTCCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGata > 2:2953745/1‑91 (MQ=255) cagATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCa < 2:792927/91‑1 (MQ=255) gatgatgatAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCaaa < 1:2592186/91‑1 (MQ=255) atgatAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgt < 2:1662255/91‑1 (MQ=255) atgatAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgt < 1:219780/91‑1 (MQ=255) tgatAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgtt > 2:3275285/1‑91 (MQ=255) tgatAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgtt < 2:3726369/91‑1 (MQ=255) gatAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgttg > 1:281528/1‑91 (MQ=255) gatAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgttg > 1:239276/1‑91 (MQ=255) gatAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgttg > 2:3114349/1‑91 (MQ=255) atAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgttgt > 1:2291985/1‑91 (MQ=255) aaaCATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAAGAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAAttgttgttg < 2:3485755/91‑1 (MQ=255) aaCATTGATGAATGTTTCAATCACTGCAGTTTCCTCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGc > 1:263416/1‑91 (MQ=255) aaCATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGc > 1:24658/1‑91 (MQ=255) aaCATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGc > 2:1498146/1‑91 (MQ=255) aCATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCa > 1:3376348/1‑91 (MQ=255) aCATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCAC‑AAAAATAGTGATGATATCAAATTGTTGTTGCaa < 2:1252363/91‑1 (MQ=255) tgatgaCTGTTTCAATCACTGCAGTTTCATCTTGCAAATACTTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCAACTc > 2:489638/1‑91 (MQ=255) gatgaATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCAAATCa < 2:3376348/91‑1 (MQ=255) gatgaATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCAAATCa < 1:2130191/91‑1 (MQ=255) gatgaATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCAAATCa < 2:3138013/91‑1 (MQ=255) | TTGATTATTAAACAAAGTCATCATTTTATAAACAGTATGTACATCAAAAATAAATACACCTGAATCAGTCAGATGATGATAAACATTGATGAATGTTTCAATCACTGCAGTTTCATCTTGCAAATAATTTAGAGAGTCACAAAAAATAGTGATGATATCAAATTGTTGTTGCAAATCAAA > USA300TCH1516_ALE/1702584‑1702763 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |