| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,779,810 | A→T | 6.2% | intergenic (‑116/+26) | USA300TCH1516_01664 ← / ← rplT | hypothetical protein/50S ribosomal protein L20 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,779,810 | 0 | A | T | 6.2% | 685.9 / 24.5 | 209 | intergenic (‑116/+26) | USA300TCH1516_01664/rplT | hypothetical protein/50S ribosomal protein L20 |
| Reads supporting (aligned to +/- strand): ref base A (94/101); new base T (3/10); total (97/112) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.17e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.97e-01 | |||||||||||
Only 100 of 226 total aligned reads displayed.
TTGTTCTCTTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAATTGCG > USA300TCH1516_ALE/1779720‑1779899 | ttgttCTCTTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACaa < 2:1969058/91‑1 (MQ=255) tgttCTCTTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAAt > 1:1143575/1‑91 (MQ=255) tctcTTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGcc < 1:497549/91‑1 (MQ=255) tctcTTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGcc < 2:2440370/91‑1 (MQ=255) ttctTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCa < 2:2751117/90‑1 (MQ=255) ctctTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCa < 2:201088/91‑1 (MQ=255) tctTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCAt < 2:2856354/91‑1 (MQ=255) aaTGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTTTTTAAAAAATAAAAAAGAGATGGCATTGTCATCTCtt < 1:3279093/91‑1 (MQ=38) aaTGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGGCATTGTCATCTCtt < 1:771073/91‑1 (MQ=38) aTGCATTTTAGCAAATATGTCATATTTTCGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCttt > 2:397853/1‑91 (MQ=255) tGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCtttt > 2:358556/1‑91 (MQ=255) cATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGGCATTGTCATCTCtttttt < 2:2356791/91‑1 (MQ=38) cATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCtttttt < 1:948581/91‑1 (MQ=255) cATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCtttttt > 2:3392836/1‑91 (MQ=255) aTTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGGCATTGTCATCTCTTTTTta < 1:821915/91‑1 (MQ=37) aTTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGGCATTGTCATCTCTTTTTta < 2:2937330/91‑1 (MQ=37) ttttAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTtat < 1:3433377/91‑1 (MQ=255) ttttAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTtat < 1:2365936/91‑1 (MQ=255) ttAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATaa > 2:1205011/1‑91 (MQ=255) ttAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGATATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATaa < 2:3689153/91‑1 (MQ=255) ttAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTCGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATaa > 2:2948738/1‑91 (MQ=255) tAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAg > 2:1540237/1‑91 (MQ=255) gCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAgtg > 1:2912436/1‑91 (MQ=255) gCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAgtg < 2:2395073/91‑1 (MQ=255) cAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAgtgt > 2:2220826/1‑91 (MQ=255) aagatGTCGTATGTTAGCGATTAAAAGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGtta < 2:1599967/88‑1 (MQ=255) aaTATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGtta < 2:2264583/91‑1 (MQ=255) atatGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGttat < 2:1186505/91‑1 (MQ=255) atatGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTATTTATAAGTGttat > 2:534857/1‑91 (MQ=255) atGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGttatta < 2:1971166/91‑1 (MQ=255) atGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGttatta < 1:2873960/91‑1 (MQ=255) atGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGttatta > 2:1087291/1‑91 (MQ=255) gTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATCAGTGTTattatt > 2:1670468/1‑91 (MQ=255) gTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTattatt < 2:2086426/91‑1 (MQ=255) gTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTattatt < 1:2808551/91‑1 (MQ=255) cATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTAtttt > 2:3315582/1‑91 (MQ=255) cATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTAtttt > 2:781747/1‑91 (MQ=255) atatTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTa > 1:1001267/1‑91 (MQ=255) atatTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTa < 1:2565935/91‑1 (MQ=255) ttttAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAg < 2:3014212/91‑1 (MQ=255) ttttAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAg < 1:213977/91‑1 (MQ=255) ttAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCa < 2:2673098/91‑1 (MQ=255) aGCGATTAAATGTGGCATTTTGCTATCTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATc > 2:2205848/1‑91 (MQ=255) gATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATcttt < 1:411672/91‑1 (MQ=255) ttAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATctttag < 1:1801710/91‑1 (MQ=255) aaTGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATctttagctt > 1:3555309/1‑91 (MQ=255) gtgGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATctttagctttag > 2:3052447/1‑91 (MQ=255) atgGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTGAAAGCATctttagctttag < 2:3452471/90‑1 (MQ=255) ggCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGtt < 1:671180/91‑1 (MQ=255) ggCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGtt < 2:3319670/91‑1 (MQ=255) gCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTa < 2:886658/91‑1 (MQ=255) gCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTa < 1:1175461/91‑1 (MQ=255) cATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTAc < 1:2931725/91‑1 (MQ=255) ttttGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTa > 1:975119/1‑91 (MQ=255) tttGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTaa < 1:1515457/91‑1 (MQ=255) ttGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAAt > 1:1764414/1‑91 (MQ=255) tGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGAGTTATTATTTTAAAGCATCTTTAGCTTTAGTTAGTAAtt > 1:3615144/1‑91 (MQ=255) gCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTg > 1:779968/1‑91 (MQ=255) tttCAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTGACTAATTGAGCa < 1:3000106/91‑1 (MQ=255) tttAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCa > 1:1740022/1‑91 (MQ=255) taaaaaataaaaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCaaa < 2:2056034/91‑1 (MQ=255) aaaaaataaaaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAAt < 2:130361/91‑1 (MQ=255) aaaaaataaaaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAAt > 1:574668/1‑91 (MQ=255) aaaaataaaaaaGAGATGACAATGCCATCTCTTTTTTATACGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATg > 2:3194470/1‑91 (MQ=255) aaaaataaaaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAATCATCTTTAGCTTTAGTTACTAATTGAGCAAATg > 2:1368718/1‑91 (MQ=255) aaaataaaaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGc < 2:1421196/91‑1 (MQ=255) aaataaaaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTCTTTTACAGCACCTTTAGCCTTAGTTACTCATTGAGCAAATCCt > 2:3460400/1‑91 (MQ=255) aaataaaaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCt < 1:1723318/91‑1 (MQ=255) aataaaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCttt > 2:1444034/4‑91 (MQ=255) taaaaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCtttt > 1:1361026/1‑91 (MQ=255) taaaaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCtttt > 1:3684082/1‑91 (MQ=255) taaaaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCtttt < 2:1205471/91‑1 (MQ=255) aaaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTc > 1:3745018/1‑91 (MQ=255) aaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCg > 1:2609463/1‑91 (MQ=255) aaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGt > 2:3735376/1‑91 (MQ=255) aaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGt > 2:1404288/1‑91 (MQ=255) aaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGt < 1:707207/91‑1 (MQ=255) aaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTc < 2:831790/91‑1 (MQ=255) agagATGGCATTGTCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCa > 2:2379464/1‑91 (MQ=38) agagATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCa > 1:2513862/1‑91 (MQ=255) agaTGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGa < 2:1726765/91‑1 (MQ=255) tttaCAGTGCCTTGTCTTTTTTATATGGGTTATTATTTTAAAGCTTCTTTAGCTTTAGTTATTAATTGAGCAAATGCTTTTTCGTCAGaaa < 2:2693800/88‑1 (MQ=255) tGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGaatt > 2:3574175/1‑89 (MQ=255) gACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAAtt < 2:628404/91‑1 (MQ=255) gACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAAtt < 2:1143575/91‑1 (MQ=255) gACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAAtt < 2:3002133/91‑1 (MQ=255) gACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAAtt < 2:3751239/91‑1 (MQ=255) aCAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAAtcg < 1:1633669/91‑3 (MQ=255) aCAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAAtcg < 1:1974938/91‑3 (MQ=255) aCAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAATTg > 1:2589278/1‑91 (MQ=255) aCAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAATTg < 1:1350076/91‑1 (MQ=255) cAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAAtcgc < 2:172079/91‑4 (MQ=255) cAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAATTGc > 2:1894183/1‑91 (MQ=255) aaTGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAAtcgca < 1:2407226/91‑5 (MQ=255) aaTGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAAtcgca < 2:706927/91‑5 (MQ=255) aaTGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAATTGCg > 2:929595/1‑91 (MQ=255) aaTGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAATTGCg < 2:448056/91‑1 (MQ=255) aaTGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAATTGCg < 2:1321032/91‑1 (MQ=255) aaTGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAATTGCg < 1:2948738/91‑1 (MQ=255) aaTGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAATCGca < 1:1115605/91‑2 (MQ=255) | TTGTTCTCTTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAATTGCG > USA300TCH1516_ALE/1779720‑1779899 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |