| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,918,555 | G→A | 5.3% | intergenic (‑273/+225) | USA300HOU_RS07235 ← / ← USA300HOU_RS09510 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,918,555 | 0 | G | A | 5.3% | 638.8 / 15.3 | 189 | intergenic (‑273/+225) | USA300HOU_RS07235/USA300HOU_RS09510 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (98/81); new base A (2/8); total (100/89) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.81e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.74e-01 | |||||||||||
Only 100 of 201 total aligned reads displayed.
GTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGA > USA300TCH1516_ALE/1918465‑1918645 | gTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCg > 2:2796436/1‑91 (MQ=255) agagATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgtt < 1:331258/91‑1 (MQ=255) gagaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTGTTACAATTAAAGAGCCAACCgttg > 2:3601272/1‑91 (MQ=255) gaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgttgtt < 1:496083/91‑1 (MQ=255) gaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgttgtt < 1:258132/91‑1 (MQ=255) gaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgttgtt > 1:1782068/1‑91 (MQ=255) aTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTta > 1:1885676/1‑91 (MQ=255) tGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTtat < 2:819262/91‑1 (MQ=255) cATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAg < 2:3205451/91‑1 (MQ=255) cATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAg > 1:2214790/1‑91 (MQ=255) ttttttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTc > 1:3041715/1‑91 (MQ=255) ttttttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTc > 1:3572726/1‑91 (MQ=255) tttttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTGCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCt < 2:1222784/91‑1 (MQ=255) ttttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTa > 2:3555242/1‑91 (MQ=255) ttttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTa > 2:3559973/1‑91 (MQ=255) tttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTaa < 1:1629617/91‑1 (MQ=255) ttGTGACTATGGTAGATCCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAATGAGACAACCGTTGTTATAGGCTAAc < 2:2573539/91‑1 (MQ=18) ttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTCTGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAAc < 1:3868118/91‑1 (MQ=255) ttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAAc > 2:118452/1‑91 (MQ=255) ttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAAc > 1:2768557/1‑91 (MQ=255) tgtgACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACGATTAAAGAGCCAACCGTTGTTATAGGCTAACa < 2:787522/91‑1 (MQ=255) ttataaTGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAAt > 2:3234142/5‑91 (MQ=255) tgACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAGCAAt < 2:3802961/91‑1 (MQ=255) tgACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAAt < 2:3086444/91‑1 (MQ=255) tgACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAAt > 1:2470904/1‑91 (MQ=255) aaTGGTAGAACCTTTTCTGAACCATACACATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAACGGtt < 1:3724458/91‑1 (MQ=17) aTGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAACGGTTg < 2:3311524/91‑1 (MQ=17) aTGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAACGGTTg < 1:1461618/91‑1 (MQ=17) gTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAACGGTTGGct < 1:2657276/91‑1 (MQ=18) tAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAACGGTTGGctc < 1:3528568/91‑1 (MQ=18) gAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcct > 2:1480174/1‑91 (MQ=255) gAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcct < 2:3104641/91‑1 (MQ=255) gAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcct < 1:784831/91‑1 (MQ=255) aCCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCctct > 2:1775577/1‑91 (MQ=255) aCCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCctct < 1:3457096/91‑1 (MQ=255) cTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTa > 2:236313/1‑91 (MQ=255) cTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAACGGTTGGctc > 2:2298368/1‑80 (MQ=18) tGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAt > 2:2620107/1‑91 (MQ=255) gAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtg < 1:3203361/91‑1 (MQ=255) aaaCCATACGC‑TATGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtg > 1:1328775/2‑91 (MQ=39) aaCCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtgt > 1:547377/1‑91 (MQ=255) aaCCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtgt > 1:1718716/1‑91 (MQ=255) aCCATACGCTAT‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTCAtgtg > 2:929472/1‑91 (MQ=255) cATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCt < 2:2375397/91‑1 (MQ=255) aTACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTa < 2:1782068/91‑1 (MQ=255) aTACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTa < 2:391806/91‑1 (MQ=255) aCGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTaaa > 1:2266564/1‑91 (MQ=255) cATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAt > 2:2156627/1‑91 (MQ=255) cATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAt < 2:2490321/91‑1 (MQ=255) ctatgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAt > 1:1622304/5‑91 (MQ=255) ctatgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAt > 2:1985160/5‑91 (MQ=255) ctatgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAt > 2:2185044/5‑91 (MQ=255) ctatgCGTATGGCTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAt > 1:2982153/5‑91 (MQ=255) tatgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAtt > 1:1512919/4‑91 (MQ=255) tatgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAtt > 2:2017544/4‑91 (MQ=255) atgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAttt > 1:3056925/3‑91 (MQ=255) a‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTACAAATTta > 2:2741171/1‑91 (MQ=255) a‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATCta > 2:2741393/1‑91 (MQ=255) gCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTtat > 1:395860/1‑91 (MQ=255) tATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAgg < 2:3388483/91‑1 (MQ=255) aTGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGc > 1:1841279/1‑91 (MQ=255) aTGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGc > 2:2241660/1‑91 (MQ=255) aTGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGACTCCTCTTATTTTATGTGCTAAAAATTTATAGGc > 2:1335529/1‑91 (MQ=255) tGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCa < 2:1259178/91‑1 (MQ=255) ggTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCaa > 2:2527895/1‑91 (MQ=255) ggTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCaa > 1:1117142/1‑91 (MQ=255) ggTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCaa < 1:3066516/91‑1 (MQ=255) ttttCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAAtt > 1:1011396/1‑91 (MQ=255) ttCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAAtttt < 1:95646/91‑1 (MQ=255) cTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttat < 2:1567076/91‑1 (MQ=255) tttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttatt < 1:1167709/91‑1 (MQ=255) tttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttatt < 2:1088412/91‑1 (MQ=255) tttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttatt < 2:2698648/91‑1 (MQ=255) tttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttatt < 2:2699120/91‑1 (MQ=255) ttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttatta < 1:2063701/91‑1 (MQ=255) ttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttatta < 2:3458466/91‑1 (MQ=255) ttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTa > 1:2304806/1‑66 (MQ=255) ttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTaca < 1:1272306/91‑1 (MQ=255) ttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTaca < 1:2084190/91‑1 (MQ=255) tACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTacaa > 1:670950/1‑91 (MQ=255) aCAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTacaac > 1:3123469/1‑91 (MQ=255) cAATTAAAGATCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTacaaca < 2:1242689/91‑1 (MQ=255) cAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTacaaca > 1:994462/1‑91 (MQ=255) aaTTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTAcaacaa < 2:1454750/91‑1 (MQ=255) aTTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAAt > 1:3633038/1‑91 (MQ=255) ttAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATg > 2:1796566/1‑91 (MQ=255) ttAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATg < 1:3859045/91‑1 (MQ=255) tAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGt > 1:2609481/1‑91 (MQ=255) tAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGt < 1:1771575/91‑1 (MQ=255) aaaGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAGAAATTTATAGGCAAATTTATTACAACAATGTa > 1:3323341/1‑91 (MQ=255) aaaGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAAGTTTATTACAACAATGTa > 1:3322455/1‑91 (MQ=255) gCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACAttt > 1:2844682/1‑91 (MQ=255) ccAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTa < 2:1670200/91‑1 (MQ=255) aaCCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAg < 2:855942/91‑1 (MQ=255) aCCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAgg > 2:1727155/1‑91 (MQ=255) aCCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAgg > 1:1240339/1‑91 (MQ=255) aCCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAgg < 2:2834938/91‑1 (MQ=255) cGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTg < 1:2107036/91‑1 (MQ=255) gttgttATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGa < 2:71426/91‑1 (MQ=255) gttgttATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGa < 1:2000349/91‑1 (MQ=255) | GTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAATGTACATTTAAGGTGA > USA300TCH1516_ALE/1918465‑1918645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |