| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,962,391 | A→C | 5.1% | intergenic (‑280/+192) | USA300TCH1516_01825 ← / ← ydeN | tRNA‑Met/Putative hydrolase YdeN |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,962,391 | 0 | A | C | 5.1% | 673.8 / 24.5 | 198 | intergenic (‑280/+192) | USA300TCH1516_01825/ydeN | tRNA‑Met/Putative hydrolase YdeN |
| Reads supporting (aligned to +/- strand): ref base A (96/92); new base C (2/8); total (98/100) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.01e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.95e-01 | |||||||||||
Only 100 of 204 total aligned reads displayed.
TTGTGTAAAAAAACGCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAAT > USA300TCH1516_ALE/1962301‑1962480 | ttGTGTAAAAAAACGCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGa > 1:3590755/1‑91 (MQ=255) gtgtAAAAAAACGCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGt > 1:3404331/1‑91 (MQ=255) gtgtAAAAAAACGCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGt > 1:3043783/1‑91 (MQ=255) tgtAAAAAAACGCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGtt < 2:3681325/91‑1 (MQ=255) gtAAAAAAACGCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTta < 2:3069927/91‑1 (MQ=255) tAAAAAAACGCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTtat > 2:707290/1‑91 (MQ=255) aaaCGCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGt < 1:268540/91‑1 (MQ=255) aaCGCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGtt < 2:3404331/91‑1 (MQ=255) aaCGCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGtt < 2:2201795/91‑1 (MQ=255) cGCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTa > 1:828448/1‑91 (MQ=255) cGCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTa > 2:2794578/1‑91 (MQ=255) gCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTAc > 2:574449/1‑91 (MQ=255) gCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTAc < 2:3844444/91‑1 (MQ=255) cttcttATTCCCTTTTATCATATAAGTGTCCAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACa > 2:353186/1‑91 (MQ=255) tcttATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAAc > 2:915479/1‑91 (MQ=255) cttATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACg > 2:898094/1‑91 (MQ=255) cttATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACg > 2:2259175/1‑91 (MQ=255) ttATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTAAAAAGTTTACAACGc < 2:2621357/91‑1 (MQ=255) tATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGcc < 1:1966648/91‑1 (MQ=255) tATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGcc < 1:3237667/91‑1 (MQ=255) aTTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGCGTTGTAAACTTTATAACTCCt < 1:3648960/91‑1 (MQ=25) ccTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGCGTTGTAAACTTTATAACTCCTATAc < 1:2209555/91‑1 (MQ=25) cTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGCGTTGTAAACTTTATAACTCCTATAcc < 1:817119/91‑1 (MQ=25) cTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATAcc < 1:2243546/91‑1 (MQ=255) cTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATAcc < 1:889376/91‑1 (MQ=255) ttttATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGCGTTGTAAACTTTATAACTCCTATACCt < 1:1662840/91‑1 (MQ=21) ttttATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCt > 2:2458872/1‑91 (MQ=255) ttttATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCt < 1:3353749/91‑1 (MQ=255) tATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCt < 1:2794578/91‑1 (MQ=255) aTCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTg < 1:2015964/91‑1 (MQ=255) tCATATAAGTGTCTAGTAGTTGTCAGGAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGa < 2:3361844/91‑1 (MQ=255) tCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGa < 2:3066117/91‑1 (MQ=255) tCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGCTATAAAGTTTACAACGCCTATACCTTCTGa < 1:353186/91‑1 (MQ=255) cATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGaa > 2:1581162/1‑91 (MQ=255) atatAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGaaa < 2:153670/91‑1 (MQ=255) atatAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGaaa > 2:440796/1‑91 (MQ=255) tataAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGaaaa > 1:1790297/1‑91 (MQ=255) tataAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGaaaa < 1:3836217/91‑1 (MQ=255) taAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAg < 1:3212753/91‑1 (MQ=255) tgtCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAAt > 1:952559/1‑91 (MQ=255) tCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATta > 1:3562682/1‑91 (MQ=255) tCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATta > 2:2364201/1‑91 (MQ=255) tCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATAAAAAATAAAAAAGAAATta < 2:2953024/91‑1 (MQ=255) cTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATtat < 1:3679299/91‑1 (MQ=255) tAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATtata > 2:1951822/1‑91 (MQ=255) tAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATtata < 1:1863584/91‑1 (MQ=255) tAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATtata < 1:2066387/91‑1 (MQ=255) aaTAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATaa > 1:480309/1‑91 (MQ=255) aaTAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATaa < 1:627944/91‑1 (MQ=255) tAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATaaaa < 2:943273/91‑1 (MQ=255) aGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAg < 1:2386439/91‑1 (MQ=255) gTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGc < 1:2142352/91‑1 (MQ=255) ttGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCt < 1:2492550/91‑1 (MQ=255) tGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAACTATAAAAGCtt > 1:3518585/1‑91 (MQ=255) tCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGt < 1:1365889/91‑1 (MQ=255) tCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGt > 1:990765/1‑91 (MQ=255) tCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGt > 1:1784243/1‑91 (MQ=255) tCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGt > 1:3008052/1‑91 (MQ=255) cATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGtt > 1:1502897/1‑91 (MQ=255) cATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGtt < 2:1844425/91‑1 (MQ=255) cATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGtt > 2:3192152/1‑91 (MQ=255) aTAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTa > 2:1815436/1‑91 (MQ=255) tAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTac < 1:1325321/91‑1 (MQ=255) aaaTAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTaca > 2:121856/1‑91 (MQ=255) aaTAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTacac < 1:1481430/91‑1 (MQ=255) aaTAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTacac > 1:713862/1‑91 (MQ=255) aTAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGt > 2:2703705/1‑85 (MQ=255) aTAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGt < 1:2703705/85‑1 (MQ=255) aTAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACAcc < 2:824910/91‑1 (MQ=255) aTAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACAcc > 1:2537549/1‑91 (MQ=255) tAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCg < 2:2529919/91‑1 (MQ=255) aGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGc > 1:493136/1‑91 (MQ=255) aGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGc < 2:1601477/91‑1 (MQ=255) ttAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCatat > 1:380076/1‑91 (MQ=255) aaGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCt > 1:1568998/1‑91 (MQ=255) aGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCtt < 2:2649430/91‑1 (MQ=255) ttAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTtcagt > 1:2907889/1‑91 (MQ=255) aaaaGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTtcagtcag > 2:3750265/1‑91 (MQ=255) aaaaGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTtcagtcag > 1:3127184/1‑91 (MQ=255) aaaaGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTtcagtcag > 2:32431/1‑91 (MQ=255) aaaaGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTtcagacag > 1:3127555/1‑91 (MQ=255) aaaGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGc < 1:3805373/91‑1 (MQ=255) aaGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTtcagtc < 2:1996088/87‑1 (MQ=255) aaGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCg < 2:87951/91‑1 (MQ=255) aGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGa > 1:1157742/1‑91 (MQ=255) aGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGa > 1:1881355/1‑91 (MQ=255) ggTATAGGCGTTGTAAACTTTATAACTCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGAc > 2:3476947/1‑91 (MQ=25) ggTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGAc > 2:3285803/1‑91 (MQ=255) ggTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGAc < 2:1468994/91‑1 (MQ=255) ggTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGAc > 2:874139/1‑91 (MQ=255) gTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACt < 2:3590755/91‑1 (MQ=255) gTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACt > 2:3010806/1‑91 (MQ=255) gTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACt < 2:1050931/91‑1 (MQ=255) tataGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTa > 1:1183256/1‑91 (MQ=255) taGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTAcc < 1:2861512/91‑1 (MQ=255) aGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCa > 1:771322/1‑91 (MQ=255) ggAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATCAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCaa > 1:3874540/1‑91 (MQ=255) ggAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCaa > 1:3454837/1‑91 (MQ=255) gAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAat < 2:444346/91‑1 (MQ=255) gAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAat < 1:1011914/91‑1 (MQ=255) | TTGTGTAAAAAAACGCTTCTTATTCCCTTTTATCATATAAGTGTCTAATAGTTGTCATAAATAGTGTTAAAGCATTTAAAAAGGTATAGGAGTTATAAAGTTTACAACGCCTATACCTTCTGAAAAAGAAATTATAAAAGCTTGTTACACCGCATATTCTTTCAGTCAGCGACTACCAAT > USA300TCH1516_ALE/1962301‑1962480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |