| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,985,405 | T→A | 7.0% | P314P (CCA→CCT) | fumC ← | Fumarate hydratase class II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,985,405 | 0 | T | A | 7.0% | 674.1 / 28.5 | 202 | P314P (CCA→CCT) | fumC | Fumarate hydratase class II |
| Reads supporting (aligned to +/- strand): ref base T (98/89); new base A (4/10); total (102/100) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.97e-01 | |||||||||||
Only 100 of 204 total aligned reads displayed.
AACTGTATCATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAATTTTCATTAAGTCT > USA300TCH1516_ALE/1985315‑1985495 | acTGTATCATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTg < 2:2738361/91‑1 (MQ=255) acTGTATCATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTg < 2:3518063/91‑1 (MQ=255) cTGTATCATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTgg > 2:1558254/1‑91 (MQ=255) tGTATCATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGt > 1:2469967/1‑91 (MQ=255) ggaTCATGACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGtt < 1:277114/89‑1 (MQ=255) tATCATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTc < 2:3498693/91‑1 (MQ=255) tATCATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCAGGTTc < 2:1968702/91‑1 (MQ=255) tATCATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCAGGTTc < 2:2075839/91‑1 (MQ=255) aTCATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCa < 2:2935251/91‑1 (MQ=255) aTCATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCAGGTTCa < 2:1360122/91‑1 (MQ=255) aTCATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCAGGTTCa < 1:1542818/91‑1 (MQ=255) tCATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCAt < 2:3028569/91‑1 (MQ=255) tCATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCAt > 2:2524620/1‑91 (MQ=255) tCATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCAt < 2:3723397/91‑1 (MQ=255) tCATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCAGGTTCAt < 2:1436144/91‑1 (MQ=255) cATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCAGGTTCAtc < 1:2585399/91‑2 (MQ=255) aCCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCa > 2:1175428/1‑91 (MQ=255) aTTACTTGGACTGCAACCATTGTTAGCATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGa < 1:3612555/91‑1 (MQ=255) aTTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGa > 1:337825/1‑91 (MQ=255) tACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATa < 1:912826/91‑1 (MQ=255) tACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATa > 2:1071263/1‑91 (MQ=255) aCTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAg > 1:231146/1‑91 (MQ=255) cTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGa < 2:2710179/91‑1 (MQ=255) ggACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAAt > 2:3574411/1‑91 (MQ=255) ggACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAAt > 2:2284153/1‑91 (MQ=255) ggACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAAt > 1:1643817/1‑91 (MQ=255) ggACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAAt < 1:1063086/91‑1 (MQ=255) gACTGCAACCATCGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAGAtt > 1:3005084/1‑91 (MQ=255) aCTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAAttt > 2:1974398/1‑91 (MQ=255) cAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGc > 1:2527999/1‑91 (MQ=255) cAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGc > 1:1317894/1‑91 (MQ=255) cAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGc > 1:2121166/1‑91 (MQ=255) aaCCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGcc < 1:2433987/91‑1 (MQ=255) aaCCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGcc > 1:1791784/1‑91 (MQ=255) ccATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCaa > 2:3203546/1‑91 (MQ=255) ccATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCaa > 1:2085911/1‑91 (MQ=255) ttGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGCCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAACTTCTGCCAAAcc > 2:1053303/1‑91 (MQ=255) gTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAg < 2:2505432/91‑1 (MQ=255) tAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCt < 2:2110652/91‑1 (MQ=255) tAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCt > 1:1417706/1‑91 (MQ=255) tAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCt > 2:2156189/1‑91 (MQ=255) tAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCt < 1:2262922/91‑1 (MQ=255) acacttCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAAc > 2:1722740/5‑84 (MQ=255) acacTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAAc < 1:1722740/84‑1 (MQ=255) aCATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCg > 1:3526295/1‑91 (MQ=255) cATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGt > 1:2102680/1‑91 (MQ=255) cATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGt < 2:3777168/91‑1 (MQ=255) aTTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTg < 2:3875889/91‑1 (MQ=255) ttCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGc > 1:134870/1‑91 (MQ=255) tCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGCTAGAAATTTCTGCCAAACCAGCTCGTGGcc > 2:2374679/1‑91 (MQ=255) tCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGcc < 2:337825/91‑1 (MQ=255) cacaTTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGccc > 1:1930801/1‑91 (MQ=255) cacaTTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGccc > 2:744000/1‑91 (MQ=255) cacaTTGTGTAGGATTAACTTTACCAGGCATAATTGAGGAACCGGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGccc < 2:3828443/91‑1 (MQ=255) caTTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTg > 2:115504/1‑91 (MQ=255) caTTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTg > 2:3356896/1‑91 (MQ=255) aTTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGa < 1:1229236/91‑1 (MQ=255) tgtgTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAg > 1:3049772/1‑91 (MQ=255) gtgtAGGTTTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGACCCTGAAGc < 1:1951174/91‑1 (MQ=255) tgtAGGATTAGCTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGcc < 2:515881/91‑1 (MQ=255) tgtAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGcc < 2:1485338/91‑1 (MQ=255) tgtAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGcc > 1:719122/1‑91 (MQ=255) tgtAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAACTCGTGGCCCTGAAGcc < 2:2085911/91‑1 (MQ=255) gtAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCa > 2:2423524/1‑91 (MQ=255) tAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCaa < 1:3824617/91‑1 (MQ=255) aGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGTTCGTGGCCCTGAAGCCAAc > 1:2459341/1‑91 (MQ=255) aGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAAc > 2:1594145/1‑91 (MQ=255) aGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAAc > 2:2692603/1‑91 (MQ=255) ggATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAAcc > 2:1445696/1‑91 (MQ=255) ggATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAAcc < 1:2743232/91‑1 (MQ=255) ggATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAAcc < 2:1329379/91‑1 (MQ=255) ttAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCAtc < 2:2345334/91‑1 (MQ=255) aaCTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCAtctc < 1:3708255/91‑1 (MQ=255) aCTTTACCAGGCATTATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTca < 1:2207025/91‑1 (MQ=255) aCTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTca > 1:1098137/1‑91 (MQ=255) cTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTcac > 2:1396950/1‑91 (MQ=255) tACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCAcatc > 1:84011/1‑91 (MQ=255) tACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCAcatc > 2:573439/1‑91 (MQ=255) aCCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCAcatca < 2:376961/91‑1 (MQ=255) ccAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCAcatcat > 1:1905187/1‑91 (MQ=255) cggCATAATTGATGAACCTGGTTCATTTTCAGGGAAAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTa < 1:612054/90‑1 (MQ=255) aGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTa > 1:3547206/1‑91 (MQ=255) aGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTa < 1:1411975/91‑1 (MQ=255) ggCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAg > 2:2804183/1‑91 (MQ=255) tAATTGATGAACCTGGTTCATTTTCAGGGGTAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAAt < 1:3115985/91‑1 (MQ=255) tAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAAt < 2:2668203/91‑1 (MQ=255) ttGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAAtttt > 2:613771/1‑91 (MQ=255) ttGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAAtttt < 2:397321/91‑1 (MQ=255) tgatgaACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAATTTTc > 1:2836723/1‑91 (MQ=255) gatgaACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAATTTTCa > 2:1915632/1‑91 (MQ=255) gatgaACCTGGTTCATGTTCAGGGAGAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAATTTTCa < 1:1855138/91‑1 (MQ=255) atgaACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGc > 2:1853069/1‑82 (MQ=255) gaACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAATTTTCATTa > 1:2084068/1‑91 (MQ=255) gaACCAGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAATTTTCATTa > 1:470895/1‑91 (MQ=255) aaCCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAATTTTCATTaa < 2:123535/91‑1 (MQ=255) aCCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAATTTTCATTAAg < 2:3005084/91‑1 (MQ=255) cTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAATTTTCATTAAGtc < 1:1737061/91‑1 (MQ=255) cTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAATTTTCATTAAGtc > 1:1962723/1‑91 (MQ=255) cTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAATTTTCATTAAGtc < 1:774945/91‑1 (MQ=255) tGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAATTTTCATTAAGtct < 1:1366381/91‑1 (MQ=255) | AACTGTATCATTACCCATTACTTGGACTGCAACCATTGTTAACATTTCACATTGTGTAGGATTAACTTTACCAGGCATAATTGATGAACCTGGTTCATTTTCAGGGATAGAAATTTCTGCCAAACCAGCTCGTGGCCCTGAAGCCAACCATCTCACATCATTAGCAATTTTCATTAAGTCT > USA300TCH1516_ALE/1985315‑1985495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |