Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 2,077,620 T→G 6.5% L174L (CTA→CTC yxlF_3 ← putative ABC transporter ATP‑binding protein YxlF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE2,077,6200TG 6.5% 725.4 / 35.0 215L174L (CTA→CTCyxlF_3putative ABC transporter ATP‑binding protein YxlF
Reads supporting (aligned to +/- strand):  ref base T (95/106);  new base G (7/7);  total (102/113)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.11e-01

Only 100 of 225 total aligned reads displayed.

CATGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAGGCTCA  >  USA300TCH1516_ALE/2077530‑2077710
                                                                                          |                                                                                          
cATGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATAtt                                                                                            <  1:2316943/91‑1 (MQ=255)
cATGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATAtt                                                                                            <  1:3380343/91‑1 (MQ=255)
  tGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAg                                                                                          <  1:2718899/91‑1 (MQ=255)
  tGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAg                                                                                          <  1:2403475/91‑1 (MQ=255)
  tGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAg                                                                                          <  2:3455939/91‑1 (MQ=255)
    tttACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGaa                                                                                        <  1:3784245/91‑1 (MQ=255)
     ttACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAAt                                                                                       <  2:137000/91‑1 (MQ=255)
       aCATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATtc                                                                                     >  1:2010473/1‑91 (MQ=255)
        cATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCAGAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATtct                                                                                    <  1:3082662/91‑1 (MQ=255)
        cATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATCAATTCAATATCTTCTAACTTATGACTTGATATTAGAATtct                                                                                    >  2:2762875/1‑91 (MQ=255)
             tGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCatat                                                                               >  1:524316/1‑91 (MQ=255)
             tGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCatat                                                                               >  2:864637/1‑91 (MQ=255)
              gAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATc                                                                              <  2:1180336/91‑1 (MQ=255)
               aaCAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCa                                                                             <  1:1559313/91‑1 (MQ=255)
                aCAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCaa                                                                            >  1:1975128/1‑91 (MQ=255)
                aCAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATGCTCATATCaa                                                                            <  2:3527672/91‑1 (MQ=255)
                aCAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATGAGAATTCTAATATCaa                                                                            <  2:2644114/91‑1 (MQ=255)
                aCAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATGAGAATTCTAATATCaa                                                                            <  2:1053748/91‑1 (MQ=255)
                 cAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAg                                                                           <  1:209894/91‑1 (MQ=255)
                  aaaaTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATGAGAATTCTAATATCAAGt                                                                          <  1:2834740/91‑1 (MQ=255)
                   aaaTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGtt                                                                         <  1:3240421/91‑1 (MQ=255)
                   aaaTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGtt                                                                         >  1:1236689/1‑91 (MQ=255)
                   aaaTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGtt                                                                         >  2:663777/1‑91 (MQ=255)
                     aTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCa                                                                       <  2:3213998/91‑1 (MQ=255)
                     aTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCa                                                                       <  2:3330147/91‑1 (MQ=255)
                     aTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATGAGAATTCTAATATc                                                                              >  1:3524843/1‑84 (MQ=255)
                     aTGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAAGATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCa                                                                       <  1:3077443/91‑1 (MQ=255)
                      tGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCAt                                                                      <  1:514361/91‑1 (MQ=255)
                      tGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCAt                                                                      >  2:3016798/1‑91 (MQ=255)
                        tCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCAttt                                                                    >  2:3049949/1‑91 (MQ=255)
                         ccGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTa                                                                   <  2:1601764/91‑1 (MQ=255)
                          cGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTAc                                                                  >  1:1379041/1‑91 (MQ=255)
                          cGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTAc                                                                  >  2:896794/1‑91 (MQ=255)
                          cGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTAc                                                                  >  1:1378946/1‑91 (MQ=255)
                          cGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTAc                                                                  >  1:1378977/1‑91 (MQ=255)
                           gTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACt                                                                 <  2:3729282/91‑1 (MQ=255)
                           gTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACt                                                                 <  2:229487/91‑1 (MQ=255)
                           gTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACt                                                                 >  1:1997816/1‑91 (MQ=255)
                            tctcTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTa                                                                <  2:1497012/91‑1 (MQ=255)
                              tctTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTaaa                                                              <  2:826652/91‑1 (MQ=255)
                              tctTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTaaa                                                              <  2:2241165/91‑1 (MQ=255)
                              tctTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTaaa                                                              >  1:1470116/1‑91 (MQ=255)
                               ctTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAg                                                             <  1:3765624/91‑1 (MQ=255)
                               ctTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAg                                                             <  1:544587/91‑1 (MQ=255)
                               ctTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTGCATTTACTAAAg                                                             >  2:3219500/1‑91 (MQ=255)
                                ttAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGa                                                            <  1:1529108/91‑1 (MQ=255)
                                   aaaaTACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACtt                                                         <  1:654512/91‑1 (MQ=255)
                                      aTACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAAt                                                      <  2:2316602/91‑1 (MQ=255)
                                        aCAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAg                                                                                          <  2:334313/53‑1 (MQ=255)
                                        aCAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAg                                                                                          >  1:334313/1‑53 (MQ=255)
                                         cAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGt                                                   >  2:2467393/1‑91 (MQ=255)
                                           gCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAg                                                 <  2:1756498/91‑1 (MQ=255)
                                           gCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAg                                                 <  1:1143920/91‑1 (MQ=255)
                                                aTCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGc                                            <  1:2495812/91‑1 (MQ=255)
                                                aTCACAAATTAATTCAATATCTTCTAACTTATGACTGGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGc                                            <  2:3508583/91‑1 (MQ=255)
                                                   acaAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGcaca                                         >  1:3650970/1‑91 (MQ=255)
                                                   acaAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGcaca                                         >  1:979610/1‑91 (MQ=255)
                                                     aaaTTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATc                                       >  1:1103196/1‑91 (MQ=255)
                                                       attaattCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCaa                                     <  1:956966/91‑1 (MQ=255)
                                                          aattCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTg                                  <  1:2650317/91‑1 (MQ=255)
                                                          aattCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTg                                  >  1:3845417/1‑91 (MQ=255)
                                                          aattCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTg                                  <  2:1434249/91‑1 (MQ=255)
                                                          aattCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTg                                  >  2:1212451/1‑91 (MQ=255)
                                                            ttCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAg                                >  2:3321600/1‑91 (MQ=255)
                                                             tCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGc                               <  2:1827382/91‑1 (MQ=255)
                                                             tCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGc                               >  2:1526122/1‑91 (MQ=255)
                                                             tCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGc                               <  2:2354099/91‑1 (MQ=255)
                                                             tCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGc                               >  1:3882604/1‑91 (MQ=255)
                                                              cAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGcc                              >  2:1140209/1‑91 (MQ=255)
                                                              cAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGcc                              >  1:3174164/1‑91 (MQ=255)
                                                              cAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGcc                              <  2:1293472/91‑1 (MQ=255)
                                                               aaTATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCa                             <  2:1901689/91‑1 (MQ=255)
                                                               aaTATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCa                             >  1:718306/1‑91 (MQ=255)
                                                                 tatCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATc                           <  1:1879702/91‑1 (MQ=255)
                                                                    cttctAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTgg                        <  1:2634768/91‑1 (MQ=255)
                                                                    cttctAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTgg                        >  2:2176315/1‑91 (MQ=255)
                                                                     ttctAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGa                       <  2:23245/91‑1 (MQ=255)
                                                                      tctAACTTATGACTTGATATTAGATTTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGAt                      <  2:3609394/91‑1 (MQ=255)
                                                                        tAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATcc                    >  2:438940/1‑91 (MQ=255)
                                                                        tAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATcc                    >  1:1766507/1‑91 (MQ=255)
                                                                        tAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATcc                    >  1:2258013/1‑91 (MQ=255)
                                                                         aaCTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCa                   <  2:3777841/91‑1 (MQ=255)
                                                                         aaCTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCa                   >  1:1737060/1‑91 (MQ=255)
                                                                         aaCTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCa                   <  1:1616936/91‑1 (MQ=255)
                                                                         aaCTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCa                   <  1:1005935/91‑1 (MQ=255)
                                                                          aCTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCAt                  <  1:808827/91‑1 (MQ=255)
                                                                            ttATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATAc                <  1:36263/91‑1 (MQ=255)
                                                                            ttATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATAc                <  2:171138/91‑1 (MQ=255)
                                                                              aTGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCa              <  1:3476361/91‑1 (MQ=255)
                                                                               tGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCAt             >  2:1928712/1‑91 (MQ=255)
                                                                               gaaCTTGATATGAGAATTCTAATATCAAGTTCATTTACTAACGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCAt             >  1:3361753/3‑91 (MQ=38)
                                                                                 aCTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCAttt           >  1:2378891/1‑91 (MQ=255)
                                                                                 aCTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCAttt           >  2:3553898/1‑91 (MQ=255)
                                                                                  cTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTg          >  2:2932092/1‑91 (MQ=255)
                                                                                     gATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAg       >  1:2883531/1‑91 (MQ=255)
                                                                                      atatTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAgg      <  2:2627810/91‑1 (MQ=255)
                                                                                      atatGAGAATTCTAATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAgg      >  2:3468036/1‑91 (MQ=255)
                                                                                       tatTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAGGc     <  2:625563/91‑1 (MQ=255)
                                                                                        atTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTg                         >  2:480275/1‑70 (MQ=255)
                                                                                        atTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAGGCt    <  1:1183094/91‑1 (MQ=255)
                                                                                          |                                                                                          
CATGTTTACATCTTGAACAAAATGTCCGTCTCTTAAAAATACAGCTCTATCACAAATTAATTCAATATCTTCTAACTTATGACTTGATATTAGAATTCTCATATCAAGTTCATTTACTAAAGACTTAATTGTAGTCAGCACATCAATTGAGCCATCTGGATCCATACCATTTGTAGGCTCA  >  USA300TCH1516_ALE/2077530‑2077710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: