| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,133,490 | A→T | 6.6% | intergenic (+334/+38) | dapE → / ← USA300HOU_RS10885 | putative succinyl‑diaminopimelate desuccinylase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,133,490 | 0 | A | T | 6.6% | 806.2 / 33.4 | 242 | intergenic (+334/+38) | dapE/USA300HOU_RS10885 | putative succinyl‑diaminopimelate desuccinylase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (103/123); new base T (6/10); total (109/133) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.29e-01 | |||||||||||
Only 100 of 244 total aligned reads displayed.
GGAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTTATTGT > USA300TCH1516_ALE/2133403‑2133580 | ggAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAAtt < 2:52598/91‑1 (MQ=255) gAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAAttt > 2:2599214/1‑91 (MQ=255) aTGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTt‑at > 1:3178463/1‑91 (MQ=255) tGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTt‑ata > 1:2255772/1‑91 (MQ=255) tGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTt‑ata > 2:2315710/1‑91 (MQ=255) tGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTt‑ata > 1:2082256/1‑91 (MQ=255) tGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTt‑ata < 1:470024/91‑1 (MQ=255) tGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTAT‑AAATTAtttgata < 2:1681813/91‑5 (MQ=25) tGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGACTTCTATCAAATAATTt‑ata > 1:1515520/1‑91 (MQ=255) gggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAg < 2:3429259/91‑1 (MQ=255) gggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAg > 1:3666968/1‑91 (MQ=255) gggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAg < 1:1583288/91‑1 (MQ=255) ggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTAT‑AAATTATTTGATAGa < 1:2830459/91‑1 (MQ=25) gACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGaa > 1:2416382/1‑91 (MQ=255) aCATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGaaa > 2:3473543/1‑91 (MQ=255) cATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTAT‑AAATTATTTGATAGAAAt < 1:3238982/91‑1 (MQ=21) aTAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATc < 1:2704389/91‑1 (MQ=255) aTAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATc < 2:2909179/91‑1 (MQ=255) aTAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATAAATTATTTG‑ATAGAAATc < 2:2398404/91‑1 (MQ=21) tAAATCCCTAGAAAACAGCAGCTCAACGCGCTGTAAATTATCAAATACATGTGAAAAAAGCTGATTTCTATAAATTATTTG‑ATAGAAATCa < 2:759044/91‑1 (MQ=18) tAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCa < 2:1909206/91‑1 (MQ=255) tAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCa < 1:304816/91‑1 (MQ=255) tAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTAT‑AAATTATTTGATAGAAATCa < 1:1072447/91‑1 (MQ=21) aaTCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGc < 1:684145/91‑1 (MQ=255) aaTCCCTAGAAAACAGCAGCTCAACGAGCTGTAAAGTATCAAATACATTTGAAAAAAGCTGATTTCTATAAATTATTTG‑ATAGAAATCAGc < 2:2672034/91‑1 (MQ=18) aTCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCGGCt < 2:899888/91‑1 (MQ=255) cccTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCttt > 2:1767435/1‑91 (MQ=255) gAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTAc > 1:2582118/1‑91 (MQ=255) gAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTAc > 1:541648/1‑91 (MQ=255) aaaaCAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACa > 2:2464972/1‑91 (MQ=255) aaaCAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACAt < 1:951636/91‑1 (MQ=255) aaCAGCAGCTCGACGAGCTGTAACTTATCAAATACATTTGAAAAAAGCTGATTTCTATCGAATAATTT‑ATAGAAATCAGCTTTTTTACAtt < 2:2967026/91‑1 (MQ=255) aaCAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACAtt > 2:1265663/1‑91 (MQ=255) cagcagCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGt < 2:3516526/91‑1 (MQ=255) agcagcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTc > 1:911465/1‑91 (MQ=255) gcagcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCt > 1:186584/1‑91 (MQ=255) agcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTaa < 2:3734502/91‑1 (MQ=255) agcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTaa < 2:3771095/91‑1 (MQ=255) cTCAACGGGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGa < 2:2840897/91‑1 (MQ=255) tCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGaa < 1:3746410/91‑1 (MQ=255) cgttgAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAAc > 1:3219352/5‑91 (MQ=255) cgttgAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAAc > 2:3087802/5‑91 (MQ=255) cAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAAc < 1:434910/91‑1 (MQ=255) cAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAAc < 1:96868/91‑1 (MQ=255) aCGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACtt < 1:756344/91‑1 (MQ=255) aCGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACtt < 1:3835214/91‑1 (MQ=255) cGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAAc < 2:1749743/88‑1 (MQ=255) gAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTaa < 2:323524/91‑1 (MQ=255) cTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgt > 2:686339/1‑91 (MQ=255) tGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtc > 2:2278207/1‑91 (MQ=255) tGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtc < 2:2635442/91‑1 (MQ=255) tGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtc < 1:1057984/91‑1 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc > 2:2802889/1‑91 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc > 1:3495161/1‑91 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc < 2:444732/91‑1 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc > 1:2107530/1‑91 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc > 1:423334/1‑91 (MQ=255) aaaTTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCtttttt > 1:2456615/1‑65 (MQ=255) aaaTTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCtttttt < 2:2456615/65‑1 (MQ=255) aaaTTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctct < 2:1969553/91‑1 (MQ=255) aTTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctgt < 2:585511/91‑1 (MQ=255) tATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctgtct < 2:2110324/91‑1 (MQ=255) aTCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctgtctc < 2:18238/91‑1 (MQ=255) aTCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctgtctc < 1:614836/91‑1 (MQ=255) tCAAATACATTTGAAAAAAGCTGACTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATgtctctgtctct < 2:1515520/91‑1 (MQ=255) cAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCtt > 2:3628603/1‑91 (MQ=255) cAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCtt < 1:3207087/91‑1 (MQ=255) aaaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCttt < 1:573536/91‑1 (MQ=255) aaaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCttt > 1:2114545/1‑91 (MQ=255) aaaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCttt > 1:1737483/1‑91 (MQ=255) aaaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCttt > 1:1009539/1‑91 (MQ=255) aaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTg < 2:1195822/91‑1 (MQ=255) tACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGa > 2:2613008/1‑91 (MQ=255) cATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAAc < 2:342243/91‑1 (MQ=255) cATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAAc < 1:2886030/91‑1 (MQ=255) aTTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACt > 1:2766650/1‑91 (MQ=255) aTTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACt < 2:165138/91‑1 (MQ=255) aTTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAACCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACt > 1:240396/1‑91 (MQ=255) tttGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTGCATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACtt < 2:3192811/91‑1 (MQ=255) ttGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACttt < 1:2048975/91‑1 (MQ=255) tGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTta > 2:371427/1‑91 (MQ=255) aaaaaaGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTtata < 1:254713/91‑1 (MQ=255) aaaaaaGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTtata < 1:3588707/91‑1 (MQ=255) aaGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTAAATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTc > 2:2989116/1‑91 (MQ=255) aGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTACATTTCa > 2:3876806/1‑91 (MQ=255) gCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCAt < 2:726581/91‑1 (MQ=255) gCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCAt > 1:390810/1‑91 (MQ=255) cTGATTTCTATCAAATAATTT‑ATATAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATa < 2:3618406/91‑1 (MQ=255) gATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAg > 2:1573353/1‑91 (MQ=255) gATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCAGAAg > 1:3009726/1‑91 (MQ=255) aTTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGt < 1:36560/91‑1 (MQ=255) aTTTCTAT‑AAATTATTTGATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGt > 2:1408046/1‑91 (MQ=25) aTTTCTAT‑AAATTATTTGATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGt > 1:1908907/1‑91 (MQ=25) aTTTCTAT‑AAATTATTTGATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGt > 2:205231/1‑91 (MQ=25) tttCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTa < 2:3219352/91‑1 (MQ=255) ttCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTAc > 2:1291844/1‑91 (MQ=255) tCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACt < 1:3319521/91‑1 (MQ=255) cTATGAAGTAAGTT‑ATAGGGATCAGCTTTTTTACATTGTCTAAGAACTTAATGGCTCTGTCTCTTTGGAACTTTATATTTCATGAGTACTa < 2:1051932/91‑1 (MQ=25) tATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTAt < 2:911465/91‑1 (MQ=255) cAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATCAGTACTCtttt > 1:1286645/1‑91 (MQ=255) | GGAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTTATTGT > USA300TCH1516_ALE/2133403‑2133580 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |