| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,211,684 | T→C | 5.9% | intergenic (+677/+136) | USA300HOU_RS11275 → / ← yidC | hypothetical protein/Membrane protein insertase YidC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,211,684 | 0 | T | C | 5.9% | 712.6 / 22.5 | 221 | intergenic (+677/+136) | USA300HOU_RS11275/yidC | hypothetical protein/Membrane protein insertase YidC |
| Reads supporting (aligned to +/- strand): ref base T (104/104); new base C (11/2); total (115/106) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.01e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.20e-01 | |||||||||||
Only 100 of 230 total aligned reads displayed.
TGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAA > USA300TCH1516_ALE/2211594‑2211775 | tGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCt > 1:2491637/1‑91 (MQ=255) ttattaACTACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTa > 2:188402/1‑91 (MQ=255) ttattaACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTa > 2:1549981/1‑91 (MQ=255) ttattaACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTa < 1:1836769/91‑1 (MQ=255) tatttACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTAc < 1:3224853/91‑1 (MQ=255) tattaACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTAc < 2:3165582/91‑1 (MQ=255) tattaACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAAGATGA‑TTTCAAATGTGAAAGTCATCCTAc < 2:1628750/91‑1 (MQ=17) attaACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTAct > 2:922140/1‑91 (MQ=255) attaACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTAct < 1:3534978/91‑1 (MQ=255) attaACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTAct > 2:257036/1‑91 (MQ=255) attaACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTAct > 2:1169236/1‑91 (MQ=255) taACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTActgc < 2:1136553/91‑1 (MQ=255) taACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTActgc < 2:2934057/91‑1 (MQ=255) taACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTActgc > 1:131560/1‑91 (MQ=255) aaCCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTActgct > 2:1801311/1‑91 (MQ=255) aCTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGttt > 1:769527/1‑91 (MQ=255) tttttACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCt > 2:3306525/1‑91 (MQ=255) tttttACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCt < 1:3631700/91‑1 (MQ=255) ttACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTAtt > 1:588790/1‑91 (MQ=255) tACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTAttt > 1:2303361/1‑91 (MQ=255) aTACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATc < 2:2681417/91‑1 (MQ=255) aaaCTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATAtt < 1:3699014/91‑1 (MQ=255) aaaCTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATAtt < 1:3756957/91‑1 (MQ=255) aCTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGACA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGt > 2:3057821/1‑91 (MQ=255) aCTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGt > 1:2736495/1‑91 (MQ=255) cTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCGCATATTGta > 1:3710461/1‑91 (MQ=255) tCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGtat > 1:2674967/1‑91 (MQ=255) cGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGtata < 2:2389856/91‑1 (MQ=255) cGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGtata < 2:1700117/91‑1 (MQ=255) tAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAAtg > 2:2342349/1‑91 (MQ=255) aaTATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCAGTTTCTATTTATCACATATTGTATAAtgt > 2:1744300/1‑91 (MQ=255) tattatTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGa < 2:2897865/91‑1 (MQ=255) attattTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGac < 2:1369528/91‑1 (MQ=255) ttattTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGaca < 1:3286367/91‑1 (MQ=255) tattTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGacac < 1:3040398/91‑1 (MQ=255) tattTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGacac < 2:585783/91‑1 (MQ=255) tattTCAAATAAAAACAGCAGTAGGATGACTCTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGacac > 2:2947812/1‑91 (MQ=255) attTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACt > 2:1302670/1‑91 (MQ=255) attTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACt > 1:3828715/1‑91 (MQ=255) attTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACt < 2:2529370/91‑1 (MQ=255) tttCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTa > 1:1427222/1‑91 (MQ=255) tttCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTa > 2:2804710/1‑91 (MQ=255) gataaaTAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTaa < 2:2033378/88‑1 (MQ=255) cAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGt > 2:1651630/1‑91 (MQ=255) aaTAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGttt > 1:531734/1‑91 (MQ=255) tAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCg < 1:1405335/91‑1 (MQ=255) tAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCg < 2:1811815/91‑1 (MQ=255) agaaaCAGCAGTAAGATGA‑TTTCAAATGTGAAAGTCATCCTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGc > 1:1456074/3‑91 (MQ=14) aaaaCAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCt > 2:2861850/1‑91 (MQ=255) aCAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCttca < 1:1262119/91‑4 (MQ=255) aCAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTAtt > 1:1362336/1‑91 (MQ=255) cagcagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCttcaa < 1:1019678/91‑5 (MQ=255) cagcagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTg > 1:719758/1‑91 (MQ=255) agcagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGa > 2:1534553/1‑91 (MQ=255) gcagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGaa > 2:3635406/1‑91 (MQ=255) gcagTAAGATGA‑TTTCAAATGTGAAAGTCATCCTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGaa > 2:3834178/1‑91 (MQ=17) agTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGc < 1:999941/91‑1 (MQ=255) agTAAGATGA‑TTTCAAATGTGAAAGTCATCCTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGc > 1:193415/1‑91 (MQ=17) gTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCg < 1:623452/91‑1 (MQ=255) tAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGa > 1:3142535/1‑91 (MQ=255) aGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGaa < 1:930295/91‑1 (MQ=255) aGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGaa < 1:1614827/91‑1 (MQ=255) gATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAA < 2:769527‑M1/91‑1 (MQ=255) gATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAA > 1:2832324‑M1/1‑91 (MQ=255) aTGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAA < 1:773236‑M1/91‑1 (MQ=255) aTGACTTCCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAA > 2:644147‑M1/1‑91 (MQ=255) tgatttcaaATGTGAAAGTCATCCTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAAT > 2:1070488‑M1/4‑91 (MQ=255) tgatttcaaATGTGAAAGTCATCCTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAAT > 2:1067793‑M1/4‑91 (MQ=255) gACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATA < 1:220150‑M1/91‑1 (MQ=255) gACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATA < 2:650039‑M1/91‑1 (MQ=255) gACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATA < 2:3239185‑M1/91‑1 (MQ=255) gACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATA < 1:1759980‑M1/91‑1 (MQ=255) gACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATA < 1:831611‑M1/91‑1 (MQ=255) aCTTTCACATTTGAAA‑TCATCTTACTTCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAA < 1:3637879‑M1/91‑1 (MQ=255) cTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAAT < 1:923909‑M1/91‑1 (MQ=255) cTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAAT < 1:188402‑M1/91‑1 (MQ=255) ttCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGT < 2:273687‑M1/91‑1 (MQ=255) tCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTG > 2:1294429‑M1/1‑91 (MQ=255) cacaTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGC > 2:3328595‑M1/1‑91 (MQ=255) cacaTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGC > 2:1986581‑M1/1‑91 (MQ=255) acaTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgcg > 2:2481947/1‑91 (MQ=255) acaTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgcg > 1:2454445/1‑91 (MQ=255) acaTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgcg < 2:354648/91‑1 (MQ=255) acaTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgcg > 2:2483771/1‑91 (MQ=255) aTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGcc > 1:1684599/1‑91 (MQ=255) aTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGcc > 1:2054514/1‑91 (MQ=255) ttGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCt > 1:2352478/1‑91 (MQ=255) ttGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCt > 2:803142/1‑91 (MQ=255) aaa‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCtata > 2:3269051/1‑91 (MQ=255) aaa‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCtata > 2:3738722/1‑91 (MQ=255) aa‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATaa > 1:1526392/1‑91 (MQ=255) a‑tcatcTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATaaa > 1:3468013/1‑91 (MQ=255) catcTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGt < 1:3592113/91‑1 (MQ=255) catcTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGt > 1:577013/1‑91 (MQ=255) atcTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGtt < 2:3468013/91‑1 (MQ=255) atcTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGtt > 1:112045/1‑91 (MQ=255) cTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTaa > 1:223434/1‑91 (MQ=255) ttACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTaaa > 1:2002636/1‑91 (MQ=255) ttACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTaaa < 1:1169236/91‑1 (MQ=255) ttACTGCTGTTTCTATTTATCACATATTGAATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTAT‑GAGTTaaaa > 2:3373561/1‑91 (MQ=255) | TGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAA > USA300TCH1516_ALE/2211594‑2211775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |