Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 2,517,789 G→T 9.6% A948E (GCA→GAA)  narG ← Respiratory nitrate reductase 1 alpha chain

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE2,517,7890GT 9.6% 519.6 / 32.8 155A948E (GCA→GAA) narGRespiratory nitrate reductase 1 alpha chain
Reads supporting (aligned to +/- strand):  ref base G (73/67);  new base T (10/5);  total (83/72)
Fisher's exact test for biased strand distribution p-value = 4.15e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01

Only 100 of 164 total aligned reads displayed.

TCTTTTAACGGCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTACCTAACATACTTT  >  USA300TCH1516_ALE/2517699‑2517879
                                                                                          |                                                                                          
tCTTTTAACGGCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTg                                                                                            >  1:732229/1‑91 (MQ=255)
tCTTTTAACGGCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTg                                                                                            >  2:2668846/1‑91 (MQ=255)
 cTTTTAACGGCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGc                                                                                           <  2:831438/91‑1 (MQ=255)
 cTTTTAACGGCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGc                                                                                           <  1:403337/91‑1 (MQ=255)
 cTTTTAACGGCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGc                                                                                           <  1:403272/91‑1 (MQ=255)
  ttttAACGGCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCa                                                                                          >  1:1323241/1‑91 (MQ=255)
   tttAACGGCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCAt                                                                                         >  1:3069822/1‑91 (MQ=255)
    ttAACGGCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATc                                                                                        <  2:2515032/91‑1 (MQ=255)
     tAACGGCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCTGATGCAATACTAAGTATTTCATct                                                                                       <  1:1737437/91‑2 (MQ=37)
      aaCGGCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAg                                                                                      >  1:291443/1‑91 (MQ=255)
       aCGGCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCTGATGCAATACTAAGTATTTCATctgc                                                                                     <  1:715999/91‑4 (MQ=25)
         tgCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTa                                                                                   >  2:1031553/2‑91 (MQ=255)
         ggCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTa                                                                                   <  2:2593129/91‑1 (MQ=255)
          gCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCTGATGCAATACTAAGTATTTCATCTGCTAc                                                                                  <  1:906258/91‑1 (MQ=25)
          gCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTAc                                                                                  <  1:1881963/91‑1 (MQ=255)
           cATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTATCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACa                                                                                 >  2:3414611/1‑91 (MQ=255)
           cATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACa                                                                                 >  2:3361103/1‑91 (MQ=255)
           cATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACa                                                                                 >  2:2494173/1‑91 (MQ=255)
           cATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACa                                                                                 >  2:2179606/1‑91 (MQ=255)
             ttCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACAtt                                                                               <  2:2887923/91‑1 (MQ=255)
             ttCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACAtt                                                                               >  1:3423805/1‑91 (MQ=255)
             ttCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACAtt                                                                               >  1:3423790/1‑91 (MQ=255)
              tCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTa                                                                              >  1:646060/1‑91 (MQ=255)
               ccAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTAc                                                                             <  2:1905257/91‑1 (MQ=255)
                cAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACg                                                                            >  1:594561/1‑91 (MQ=255)
                cAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACg                                                                            >  2:645123/1‑91 (MQ=255)
                 aGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGTTATTTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGt                                                                           >  2:1481574/1‑91 (MQ=255)
                  gTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTg                                                                          <  1:2432913/91‑1 (MQ=255)
                   tttGTTCTTCGAGATCTTCATATGATTTTTGTTATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGc                                                                         <  1:2692310/91‑1 (MQ=255)
                   tttGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGc                                                                         <  1:2349036/91‑1 (MQ=255)
                   tttGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGc                                                                         <  2:2163068/91‑1 (MQ=255)
                   tttGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGc                                                                         <  2:936215/91‑1 (MQ=255)
                     tGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTg                                                                       >  2:1566952/1‑91 (MQ=255)
                      gTTCTTCGAGATCTTCATATGATTTTTGTGTTATTTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGt                                                                      >  2:130497/1‑91 (MQ=255)
                      gTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGc                                                                                     <  1:2680916/76‑1 (MQ=255)
                      gTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGt                                                                      >  1:878240/1‑91 (MQ=255)
                      gTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGt                                                                      <  2:2310775/91‑1 (MQ=255)
                         cttcGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATc                                                                   >  2:2169830/1‑91 (MQ=255)
                         cttcGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATc                                                                   <  2:389699/91‑1 (MQ=255)
                          ttcGAGATCTTCATATGATTTTTGTTATTTTTTATCATTTGTAGCAGATTAAATACTTAGTATTTCTTCATCTACATTACGTGCTGTATCa                                                                  >  2:3620431/1‑91 (MQ=255)
                          ttcGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCa                                                                  <  1:102840/91‑1 (MQ=255)
                               gaTCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACg                                                             <  2:2008346/91‑1 (MQ=255)
                               gaTCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACg                                                             >  2:2976636/1‑91 (MQ=255)
                                  cTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTAc                                                                                  <  1:2297688/67‑1 (MQ=255)
                                    tCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGAc                                                        <  1:917378/91‑1 (MQ=255)
                                     cATATGATTTTTTTTTTTTTTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTAAGTGCTGTATCAATACGTGGACg                                                       >  2:3121937/1‑91 (MQ=255)
                                      atatGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGa                                                      <  1:1661531/91‑1 (MQ=255)
                                       tatGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGAt                                                     >  1:1699592/1‑91 (MQ=255)
                                        atGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGAtt                                                    >  2:2683949/1‑91 (MQ=255)
                                            tttttGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGct                                                >  1:772216/1‑91 (MQ=255)
                                             ttttGTGATAATTTACCATTCGTAGCAAATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGctc                                               >  1:2284681/1‑91 (MQ=255)
                                              tttGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGctct                                              >  2:756990/1‑91 (MQ=255)
                                                 gtgATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTcac                                           <  1:1746951/91‑1 (MQ=255)
                                                 gtgATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTcac                                           <  1:982443/91‑1 (MQ=255)
                                                  tgATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTcaca                                          >  2:2787411/1‑91 (MQ=255)
                                                  tgATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTcaca                                          <  2:796823/91‑1 (MQ=255)
                                                    aTAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGa                                        <  2:299207/91‑1 (MQ=255)
                                                     tAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAACTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGaa                                       <  1:3882591/91‑1 (MQ=255)
                                                       aTTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAatc                                     <  2:1736957/91‑1 (MQ=255)
                                                       aTTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAatc                                     >  2:91245/1‑91 (MQ=255)
                                                        tttACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAatca                                    >  2:3608573/1‑91 (MQ=255)
                                                         ttACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAatcat                                   <  2:2629801/91‑1 (MQ=255)
                                                          tACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAatcatc                                  <  2:878240/91‑1 (MQ=255)
                                                            ccATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATcatcat                                >  2:3286130/1‑91 (MQ=255)
                                                            ccATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATcatcat                                >  2:780935/1‑91 (MQ=255)
                                                               ttCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGctct                                              <  1:1016991/74‑1 (MQ=255)
                                                               ttCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGctct                                              >  2:1016991/1‑74 (MQ=255)
                                                               ttCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTg                             <  2:653932/91‑1 (MQ=255)
                                                                tCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGt                            >  2:1095903/1‑91 (MQ=255)
                                                                 tgTAGCTGATGCAATACTAAGTATTTCATCTGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTa                           >  2:2239666/2‑91 (MQ=25)
                                                                 cGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTa                           <  1:502073/91‑1 (MQ=255)
                                                                  gTAGCTGATGCAATACTAAGTATTTCATCTGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTAt                          >  2:1144664/1‑91 (MQ=25)
                                                                    agctgATGCAATACTAAGTATTTCATCTGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCa                        >  1:2749930/5‑91 (MQ=25)
                                                                    agctgATGCAATACTAAGTATTTCATCTGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCa                        >  2:3402497/5‑91 (MQ=25)
                                                                    aGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCa                        <  1:1399703/91‑1 (MQ=255)
                                                                     gCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCAc                       >  1:141054/1‑91 (MQ=255)
                                                                       aGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTc                     <  1:2502179/91‑1 (MQ=255)
                                                                        gATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTcc                    <  1:1488426/91‑1 (MQ=255)
                                                                        gATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTcc                    >  1:472795/1‑91 (MQ=255)
                                                                         aTGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCa                   <  1:2827484/91‑1 (MQ=255)
                                                                           gAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACg                 >  1:3855087/1‑91 (MQ=255)
                                                                           gAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACg                 >  2:3743122/1‑91 (MQ=255)
                                                                           gAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACg                 >  1:1384204/1‑91 (MQ=255)
                                                                             aaTACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGCATCATCATTTGTATCACTCCACGTa               >  2:3522007/1‑91 (MQ=255)
                                                                              aTACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTAc              <  1:960759/91‑1 (MQ=255)
                                                                               tACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTAcc             >  1:1165685/1‑91 (MQ=255)
                                                                               tACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTAcc             >  1:1155694/1‑91 (MQ=255)
                                                                                 cTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTACCTa           <  1:898797/91‑1 (MQ=255)
                                                                                  ttAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTACCTaa          >  1:3801836/1‑91 (MQ=255)
                                                                                   tAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTACCTAAc         <  2:16115/91‑1 (MQ=255)
                                                                                    aGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTACCTAACa        <  1:1900512/91‑1 (MQ=255)
                                                                                     gTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTACCTAACAt       <  2:3688793/91‑1 (MQ=255)
                                                                                      tATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTACCTAACATa      <  1:1981749/91‑1 (MQ=255)
                                                                                        ttGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTACCTAACATACt    >  2:3247351/1‑91 (MQ=255)
                                                                                        ttGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTACCTAACATACt    <  1:1284715/91‑1 (MQ=255)
                                                                                          gCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTACCTAACATACttt  >  1:1354073/1‑91 (MQ=255)
                                                                                          gCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTACCTAACATACttt  <  1:1854316/91‑1 (MQ=255)
                                                                                          gCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTACCTAACATACttt  <  1:3592236/91‑1 (MQ=255)
                                                                                          gCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTACCTAACATACttt  <  1:756990/91‑1 (MQ=255)
                                                                                          gCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTACCTAACATACttt  <  2:2238300/91‑1 (MQ=255)
                                                                                          |                                                                                          
TCTTTTAACGGCATTCCAGTTTGTTCTTCGAGATCTTCATATGATTTTTGTGATAATTTACCATTCGTAGCAGATGAAATACTTAGTATTGCATCAGCTACATTACGTGCTGTATCAATACGTGGACGATTCGCTCTCACAGAATCATCATTTGTATCACTCCACGTACCTAACATACTTT  >  USA300TCH1516_ALE/2517699‑2517879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: