| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,519,951 | T→G | 13.5% | P227P (CCA→CCC) | narG ← | Respiratory nitrate reductase 1 alpha chain |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,519,951 | 0 | T | G | 13.5% | 469.9 / 70.4 | 169 | P227P (CCA→CCC) | narG | Respiratory nitrate reductase 1 alpha chain |
| Reads supporting (aligned to +/- strand): ref base T (85/60); new base G (21/2); total (107/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.08e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.06e-01 | |||||||||||
Only 100 of 178 total aligned reads displayed.
AAGGTACATTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCATAAC > USA300TCH1516_ALE/2519863‑2520042 | aaGGTACATTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTgg < 2:2302338/91‑1 (MQ=255) aGGTACATTAGAGCCCCACATAATAATGTATGATGCGTTATTCCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGga < 1:1059443/91‑1 (MQ=255) gTACATTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGgaga < 2:1841858/91‑1 (MQ=255) gTACATTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGgaga < 2:1323455/91‑1 (MQ=255) aTTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCa < 2:2944677/91‑1 (MQ=255) ttAGAGCCCCACATACTAATGTATGATGCGTTATACCAGTCACTTGCTTCAGGCACATCTGATTGCTCTCCCCATGTTTGTGGAGTGGCAg > 2:2590884/1‑91 (MQ=255) ttAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCACAAATTTGGGGagagcaaa < 1:2054580/91‑5 (MQ=39) agagCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAggt > 1:2145024/1‑91 (MQ=255) agagCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAggt > 1:2385874/1‑91 (MQ=255) agagCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAggt > 1:1397973/1‑91 (MQ=255) agagCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAggt < 1:1625133/91‑1 (MQ=255) agCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCCGTTTGCTCTCCCCAAATTTGTGGAGAGGCAggtgg > 1:964646/1‑91 (MQ=255) agCCCCACATAATAAAGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCCGTTTGCTCTCCCCAAATTTGTGGAGAGGCAggtgg > 1:964645/1‑91 (MQ=255) gCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCACAAATTTGTGGAGAGGCAggtggt < 2:2434992/91‑1 (MQ=255) ccACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTaaa > 1:251783/1‑91 (MQ=255) ccACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTaaa < 1:707316/91‑1 (MQ=255) ccACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTaaa > 1:52833/1‑91 (MQ=255) ccACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTaaa > 1:645493/1‑91 (MQ=255) ccACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTaaa > 2:2087585/1‑91 (MQ=255) cacaTAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAAt > 2:1430687/1‑91 (MQ=255) ataataATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTg > 2:1593671/1‑91 (MQ=255) ataataATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTg > 1:1104684/1‑91 (MQ=255) aatGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATAc > 1:1728248/1‑91 (MQ=255) atGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGAATAcc > 2:3137575/1‑91 (MQ=255) atGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTCTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATAcc < 1:3087662/91‑1 (MQ=255) gTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAg > 1:1819042/1‑91 (MQ=255) gTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAg < 2:1419970/91‑1 (MQ=255) tATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGt > 1:296364/1‑91 (MQ=255) tATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGt > 2:617165/1‑91 (MQ=255) tATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGt > 1:2600429/1‑91 (MQ=255) tATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGt < 1:1719842/91‑1 (MQ=255) atgatgCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTc > 1:2095741/1‑91 (MQ=255) tgatgCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCa > 1:1975469/1‑91 (MQ=255) gatgCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCCTACCAGTCAt > 2:3348716/1‑91 (MQ=255) gatgCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCAt < 1:2662341/91‑1 (MQ=255) gatgCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCAt > 2:1623976/1‑91 (MQ=255) gatgCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCAt < 2:1790637/91‑1 (MQ=255) atgCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATa > 2:1090486/1‑91 (MQ=255) atgCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATa < 1:402617/91‑1 (MQ=255) gCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATaaa < 2:2551500/91‑1 (MQ=255) gTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATaaaaa > 1:1157423/1‑91 (MQ=255) ttATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAAc > 2:1537587/1‑91 (MQ=255) ttATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAAc > 1:368245/1‑91 (MQ=255) aCCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAg > 2:2143189/1‑91 (MQ=255) cAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAACAACTAAGCa > 1:3711459/1‑91 (MQ=255) cAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCa > 1:2044673/1‑91 (MQ=255) cAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCa < 1:1651942/91‑1 (MQ=255) gTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCAtt > 2:3493722/1‑91 (MQ=255) gTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCAtt > 1:235866/1‑91 (MQ=255) gTCACTTAATTCAGGCACATCTGTTTGCTCTCCCCAGATTAGTGGAGAGGCAGGTGGTAAATCTGCCAACCAGTCAGAAAAACTAAGCAtt > 2:3612593/1‑91 (MQ=255) aCTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTca < 2:1881596/91‑1 (MQ=255) ttGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTcacc > 2:2410492/1‑91 (MQ=255) tGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTcacca < 2:3665509/91‑1 (MQ=255) gATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTcaccac > 2:3760989/1‑91 (MQ=255) aTTCAGGCACATCTGTTTGCTCTCCCCAAATTTATGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCaccacc < 1:3183963/91‑1 (MQ=255) tCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCaa < 1:2270936/91‑1 (MQ=255) ggCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCa > 1:1652258/1‑91 (MQ=255) gCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCaa > 1:764336/1‑91 (MQ=255) gCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCaa > 2:2472134/1‑91 (MQ=255) acaTCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAAt < 2:2880691/91‑1 (MQ=255) acaTCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTACACCACCAAGCAAAt < 2:2385874/91‑1 (MQ=255) caTCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCCGTCATAAAAACTAAGCATTTCACCACCAAGCAAAtt > 2:3055054/1‑91 (MQ=255) caTCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAAtt < 1:333247/91‑1 (MQ=255) tttGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGaa > 1:521936/1‑91 (MQ=255) tttGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGaa > 1:3863462/1‑91 (MQ=255) tttGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGaa > 1:1291326/1‑91 (MQ=255) tttGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGaa > 2:1476528/1‑91 (MQ=255) tGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATc < 1:3063598/91‑1 (MQ=255) gCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCg < 1:1035323/91‑1 (MQ=255) ctctCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCTGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGATTCGa < 1:3069741/91‑1 (MQ=255) tctcCTCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAg < 2:557429/91‑1 (MQ=255) tccacAAATTTGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCa > 1:3777659/5‑91 (MQ=255) ccccAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCAc < 2:3442533/91‑1 (MQ=255) cccAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCAcc > 1:3691947/1‑91 (MQ=255) cacAAATTTGGGGAGAGGCAGGTGGTAAATCTGCCTACCAGTCATAAAAACTAAGTATTTCACCACCAAGCAAATTGATGAATCGAGCAcc > 2:72204/3‑91 (MQ=255) cacAAATTTGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCAcc > 2:2937908/3‑91 (MQ=255) ccAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACct < 1:1016739/91‑1 (MQ=255) ccAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACct < 1:1016826/91‑1 (MQ=255) acAAATTTGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACct > 1:1293963/2‑91 (MQ=255) acAAATTTGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACct > 1:1313215/2‑91 (MQ=255) aaaTTTGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACctgc > 1:2295743/1‑91 (MQ=255) aaaTTTGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACctgc > 1:2157901/1‑91 (MQ=255) aaaTTTGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACctgc > 1:95905/1‑91 (MQ=255) aaaTTTGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACctgc > 1:856953/1‑91 (MQ=255) aaTTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACctgct > 2:2496779/1‑91 (MQ=255) aaTTTGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACctgct > 1:2928830/1‑91 (MQ=255) aaTTTGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACctgct > 1:2255895/1‑91 (MQ=255) aaTTTGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACctgct > 1:1703763/1‑91 (MQ=255) aTTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACctgctg > 1:241518/1‑91 (MQ=255) aTTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACctgctg < 1:711627/91‑1 (MQ=255) aTTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACctgctg < 1:1233939/91‑1 (MQ=255) aTTTGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACctgctg > 2:2784787/1‑91 (MQ=255) aTTTGGGGAGAGACAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACctgctg > 1:2973516/1‑91 (MQ=255) tttGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCtgctgc < 2:2232571/91‑1 (MQ=255) tttGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCtgctgc > 1:694529/1‑91 (MQ=255) tttGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCtgctgc > 2:1039435/1‑91 (MQ=255) ttGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCa > 1:111452/1‑91 (MQ=255) gtgGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCATa > 1:1660109/1‑91 (MQ=255) tgGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCATaa > 1:1667400/1‑91 (MQ=255) tgGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACT‑AGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCATAAc > 2:3760584/1‑91 (MQ=255) | AAGGTACATTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCATAAC > USA300TCH1516_ALE/2519863‑2520042 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |