| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 168,358 | A→T | 10.3% | intergenic (+325/+23) | yfkN_1 → / ← USA300TCH1516_00148 | Trifunctional nucleotide phosphoesterase protein YfkN/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 168,358 | 0 | A | T | 10.3% | 744.1 / 58.6 | 232 | intergenic (+325/+23) | yfkN_1/USA300TCH1516_00148 | Trifunctional nucleotide phosphoesterase protein YfkN/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (98/109); new base T (7/17); total (105/127) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.26e-01 | |||||||||||
Only 100 of 251 total aligned reads displayed.
AGGATTATGTTAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGTTTTTTTATTGTAAATTTTTA > USA300TCH1516_ALE/168268‑168448 | aTTATGTTAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCAttt > 2:3011718/1‑91 (MQ=255) aTTATGTTAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAACTGAAATGATGATCtttt < 2:1095413/91‑1 (MQ=38) ttATGTTAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTc > 2:1480903/1‑91 (MQ=255) ttATGTTAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAACTGAAATGATGATCTTTTc < 2:1656975/91‑1 (MQ=37) ttATGTTAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAACTGAAATGATGATCTTTTc < 1:1873767/91‑1 (MQ=37) ttATGTTAAGGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTc < 1:3721691/91‑1 (MQ=255) tATGTTAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCa < 2:284944/91‑1 (MQ=255) tATGTTAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCa < 2:508079/91‑1 (MQ=255) tATGTTAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAACTGAAATGATGATCTTTTCa < 2:2927205/91‑1 (MQ=37) aTGTTAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAg > 2:268696/1‑91 (MQ=255) aTGTTAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAACTGAAATGATGATCTTTTCAg < 1:1044630/91‑1 (MQ=37) tGTTAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGt < 1:1686070/91‑1 (MQ=255) tGTTAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGt < 2:3350247/91‑1 (MQ=255) gTTAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGtt < 1:1490186/91‑1 (MQ=255) gTTAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGtt < 1:2850737/91‑1 (MQ=255) ttAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTc < 2:1730720/91‑1 (MQ=255) ttAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAACTGAAATGATGATCTTTTCAgctc < 1:1522258/91‑4 (MQ=25) tAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCg < 1:56403/91‑1 (MQ=255) aTGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAg < 1:2026942/91‑1 (MQ=255) aTGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAg < 1:2384570/91‑1 (MQ=255) tGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAgg < 1:3276600/91‑1 (MQ=255) gAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGt > 2:2886482/1‑91 (MQ=255) aaaTAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGttt > 2:3334393/1‑91 (MQ=255) aaTAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGtttt < 2:3534314/91‑1 (MQ=255) aaTAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAACTGAAATGATGATCTTTTCAGCTCGAGGttta < 2:3628975/91‑2 (MQ=21) aTAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGttttt < 1:702022/91‑1 (MQ=255) aTAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGttttt > 2:845214/1‑91 (MQ=255) tAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGtttttt > 1:1287639/1‑91 (MQ=255) tAGAGAATATAATATAACGAATCTATATAAAGAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGtttttt < 2:1005416/91‑1 (MQ=255) gagaATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTttttat > 1:272710/1‑91 (MQ=255) agaATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTttttatt > 1:3525812/1‑91 (MQ=255) agaATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTttttatt > 1:2081499/1‑91 (MQ=255) agaATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTttttatt < 2:3757066/91‑1 (MQ=255) gaATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTttttattt > 2:751043/1‑91 (MQ=255) aatataatatAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTttttatttt > 1:941707/1‑91 (MQ=255) atataatataACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTttttatttta < 1:1634384/91‑1 (MQ=255) tgtcataaGGAATCTTTATAAAGAAGGCACCAATATTTAAACCTCTAGCTGAACAGATGATCATTTCAGTTGGAGGTTTTTTAGTTTATcc < 2:1351096/87‑1 (MQ=255) aatataaCGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCct > 1:1744867/1‑91 (MQ=255) atataaCGAATCGATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCctc < 2:3223603/91‑1 (MQ=255) tataaCGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCctct > 2:686463/1‑91 (MQ=255) tataaCGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCctct < 1:1996409/91‑1 (MQ=255) ataaCGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCtt < 1:1881156/91‑1 (MQ=255) cGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTa < 1:2581850/91‑1 (MQ=255) cGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTa < 2:2060376/91‑1 (MQ=255) cGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTa > 1:2340691/1‑91 (MQ=255) gAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTAt < 2:2036627/91‑1 (MQ=255) aaTCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATg > 1:3648555/1‑91 (MQ=255) tCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATggg < 1:3821328/91‑1 (MQ=255) tatataAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTa < 2:2718622/91‑1 (MQ=255) atataAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTAt > 1:3635882/1‑91 (MQ=255) atataAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTAt > 1:1970733/1‑91 (MQ=255) atataAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTAt < 1:226000/91‑1 (MQ=255) tataAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTAtt > 2:1390431/1‑91 (MQ=255) taaataaGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGtcttct > 1:812577/1‑91 (MQ=255) ataaGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCtttt < 2:2471270/91‑1 (MQ=255) aaGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTAc < 2:2340691/91‑1 (MQ=255) aGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACt < 2:2240816/91‑1 (MQ=255) ggCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACtt < 1:1395319/91‑1 (MQ=255) gCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTg > 1:1619125/1‑91 (MQ=255) gCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTg < 1:3790298/91‑1 (MQ=255) gCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTg > 2:2021308/1‑91 (MQ=255) gCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTg > 2:1136470/1‑91 (MQ=255) cACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGa < 2:3087359/91‑1 (MQ=255) cACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGa < 2:1088794/91‑1 (MQ=255) ccAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGaaa < 1:1480903/91‑1 (MQ=255) ccAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGCTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGaca > 2:399283/1‑89 (MQ=255) cAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAAt < 2:2776028/91‑1 (MQ=255) aaTATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAAtt > 2:3730550/1‑91 (MQ=255) aaTATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAAtt < 2:1902397/91‑1 (MQ=255) aaTATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAAtt < 1:3874723/91‑1 (MQ=255) aaTATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAAtt < 1:1239339/91‑1 (MQ=255) atTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGt < 1:523069/91‑1 (MQ=255) ttAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGttt > 2:1042926/1‑91 (MQ=255) ttAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGttt < 2:941707/91‑1 (MQ=255) ttAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGttt < 2:2277329/91‑1 (MQ=255) tAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGtttt < 1:1827434/91‑1 (MQ=255) aaaaCCTCGAACTGAAATGATGATCTTTTCAGCTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGtttt > 1:294306/2‑91 (MQ=21) aaaCCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTc < 2:1452253/91‑1 (MQ=255) aaCCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTcc > 1:562912/1‑91 (MQ=255) aaCCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCCTTTACTTGAAATTTGTTTTcc > 1:324210/1‑91 (MQ=255) aCCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGttt < 1:73463/39‑1 (MQ=255) aCCTCGAACTGAAATGATGATCTTTTCAGCTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCt > 1:1955646/1‑91 (MQ=21) cGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGttt < 1:1567777/91‑1 (MQ=255) gaacTGAAATGATGATCTTTTCAGCTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGtttt > 1:3570715/4‑91 (MQ=25) gAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGTTTTTTTAt < 1:2512659/91‑1 (MQ=255) aaaaGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGTTTTTTTAtt > 1:989654/1‑91 (MQ=255) aaaaGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGTTTTTTTAtt > 1:914130/1‑91 (MQ=255) aaaaGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCGTTTACTTGAAATTTGTTTTCCTGTTTTTTTAtt > 1:3441789/1‑91 (MQ=255) aaaGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGTTTTTTTATTg > 2:1787055/1‑91 (MQ=255) aaaGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGTTTTTTTATTg > 2:2311010/1‑91 (MQ=255) aaGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGTTTTTTTATTGt < 1:2187716/91‑1 (MQ=255) aaGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGTTTTTTTATTGt < 1:1605290/91‑1 (MQ=255) aGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTCTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGTTTTTTTATTGTa > 2:3190592/1‑91 (MQ=255) atcatcATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGTTTTTTTATTGTaaa < 2:2484059/91‑1 (MQ=255) tcatcaTTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGGTTTTTTATTGTAAAt > 2:1980309/1‑91 (MQ=255) catcatTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGTTTTTTTATTGTAAAtt < 2:644858/91‑1 (MQ=255) catcatTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGATATTCTTTTACTTGAAATTTGTTTTCCTGTTTTTTTATTGTAAAtt < 1:3087933/91‑1 (MQ=255) atcatTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGTTTTTTTATTGTAAAttt > 1:430580/1‑91 (MQ=255) atcatTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGTTTTTTTATTGTAAAttt < 1:1042926/91‑1 (MQ=255) atTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGTTTTTTTATTGTAAATTTtta < 1:2445417/91‑1 (MQ=255) | AGGATTATGTTAATGAAAATAGAGAATATAATATAACGAATCTATATAAATAAGGCACCAATATTTAAACCTCGAGCTGAAAAGATCATCATTTCAGTTCGAGGTTTTTTATTTTATCCTCTTTGTATGGGTATTCTTTTACTTGAAATTTGTTTTCCTGTTTTTTTATTGTAAATTTTTA > USA300TCH1516_ALE/168268‑168448 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |