| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 171,069 | A→T | 6.5% | intergenic (+418/‑32) | USA300HOU_RS07235 → / → adhE | hypothetical protein/Aldehyde‑alcohol dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 171,069 | 0 | A | T | 6.5% | 617.9 / 20.5 | 184 | intergenic (+418/‑32) | USA300HOU_RS07235/adhE | hypothetical protein/Aldehyde‑alcohol dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (64/108); new base T (8/4); total (72/112) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.41e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
Only 100 of 207 total aligned reads displayed.
TGATATTTGTTCAAATAATATTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTGGCAATTAT > USA300TCH1516_ALE/170979‑171159 | gATATTTGTTCAAATAATATTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAaat < 2:587486/91‑1 (MQ=255) tatTTGTTCAAATAATATTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAaataa < 2:162503/91‑1 (MQ=255) tatTTGTTCAAATAATATTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAaataa < 2:3088555/91‑1 (MQ=255) atTTGTTCAAATAATATTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAaataat < 1:2568733/91‑1 (MQ=255) ttGTTCAAATAATATTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTc < 1:266537/91‑1 (MQ=255) tGTTCAAATAATATTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTca > 1:1086435/1‑91 (MQ=255) ttCAAATAATAGTCGAAATTAAATTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGAGATGTACTATAATGTTTGTGAAATAATTcaca < 2:2961344/91‑1 (MQ=255) ttCAAATAATAGTCGAAATTAAATTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGAGATGTACTATAATGTTTGTGAAATAATTcaca < 2:2959740/91‑1 (MQ=255) tCAAATAATATTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACaa < 1:676737/91‑1 (MQ=255) tCAAATAATATTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACaa < 1:2995359/91‑1 (MQ=255) aaaTAATATTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAg < 2:3564996/91‑1 (MQ=255) aataatATTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTcac < 2:2425895/86‑1 (MQ=255) aataatATTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGt < 1:2522124/91‑1 (MQ=255) ataataTTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGta > 1:183373/1‑91 (MQ=255) taataTTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAATTATTTCACaaacatt < 1:3665618/91‑5 (MQ=39) aataTTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGtata < 2:1341986/91‑1 (MQ=255) aataTTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGtata < 2:788540/91‑1 (MQ=255) atatTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATaa > 2:127765/1‑91 (MQ=255) tatTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATaaa < 2:962108/91‑1 (MQ=255) tatTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATaaa < 1:1118074/91‑1 (MQ=255) tatTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATAGCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATaaa < 2:2059982/91‑1 (MQ=255) atTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAg < 2:91824/91‑1 (MQ=255) atTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAg < 2:2333075/91‑1 (MQ=255) ttCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAgg > 1:642487/1‑91 (MQ=255) tCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGa > 1:2227212/1‑91 (MQ=255) tCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGa < 2:2614366/91‑1 (MQ=255) tCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGa > 1:266983/1‑91 (MQ=255) cGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAg < 2:1039216/91‑1 (MQ=255) cGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAg < 1:3528588/91‑1 (MQ=255) aaaTTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTg < 2:199660/91‑1 (MQ=255) aTTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGt > 1:1652282/1‑91 (MQ=255) aTTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGt < 1:3377132/91‑1 (MQ=255) tAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTg < 1:806509/91‑1 (MQ=255) aaaCTTTTTTGTATCGGCTTTGCTTTATATCCTGAGAGAGATGTACTATAATGGTTGTGAGATAATTCACAAAGTATAACGGAGTGGTTGt < 2:2187838/91‑1 (MQ=255) aaCTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGta < 1:889232/91‑1 (MQ=255) aCTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGtat < 2:1436488/91‑1 (MQ=255) cTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGtata > 2:617889/1‑91 (MQ=255) ttttttGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTatat > 1:919022/1‑91 (MQ=255) ttttGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGt > 1:1809968/1‑91 (MQ=255) ttttGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGt < 1:1423207/91‑1 (MQ=255) ttttGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGt < 2:3628631/91‑1 (MQ=255) tGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAATTATAAAGGAGTGGTTGTATATGTTaa < 2:2454680/91‑1 (MQ=255) ataGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACta < 2:542209/91‑1 (MQ=255) taGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACtat > 1:2022854/1‑91 (MQ=255) gAATTTTCTTTATATCCTGAGAGACATGTACTATAAAGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATAc < 2:1534395/91‑1 (MQ=255) cTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGaaaa > 2:3857866/1‑91 (MQ=255) cTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGaaaa > 2:505968/1‑91 (MQ=255) tttATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGaaaaa < 1:2547245/91‑1 (MQ=255) tttATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGaaaaa > 2:2675072/1‑91 (MQ=255) ttATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAg < 2:1086435/91‑1 (MQ=255) ttATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAg < 2:2763035/91‑1 (MQ=255) ttATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAg < 1:3619371/91‑1 (MQ=255) tataTCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGa > 1:1373219/1‑91 (MQ=255) atatCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGaa < 2:1063130/91‑1 (MQ=255) tatCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGaaa > 1:1706404/1‑91 (MQ=255) atCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGaaaa < 2:1853171/91‑1 (MQ=255) atCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACATGAAAAAGaaaa < 2:2292332/91‑1 (MQ=255) ccTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATc > 1:3234828/1‑91 (MQ=255) tGAGAGACATGTACTATAATGTTTGTGGAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATGGt < 2:2080818/91‑1 (MQ=255) gagagaCATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTg < 1:2367194/91‑1 (MQ=255) gagagaCATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTg < 2:806958/91‑1 (MQ=255) agagaCATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTgg > 2:573326/1‑91 (MQ=255) gagaCATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGa < 2:3328000/91‑1 (MQ=255) agaCATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGAt < 2:2838278/91‑1 (MQ=255) gaCATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATc > 1:452441/1‑91 (MQ=255) aCATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCg < 2:1676374/91‑1 (MQ=255) cATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGa > 1:3420065/1‑91 (MQ=255) cATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGa < 1:2446522/91‑1 (MQ=255) cATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGCTAACTATACCTGAAAAAGAAAATCGTGGATCGa > 1:3181180/1‑91 (MQ=255) aaTGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGa < 2:2527033/90‑1 (MQ=255) aTGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGaa > 2:1264427/1‑91 (MQ=255) tGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGaaa > 1:1785576/1‑91 (MQ=255) tGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGaaa < 1:617889/91‑1 (MQ=255) aCTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGaa < 1:2504109/91‑1 (MQ=255) cTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAAc < 1:1286518/91‑1 (MQ=255) cTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAAc < 1:940376/91‑1 (MQ=255) cTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAAc < 2:1360587/91‑1 (MQ=255) ataATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACaa < 2:1016835/91‑1 (MQ=255) taATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACaag < 1:2876814/91‑1 (MQ=255) aaTGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAGAAGAAAATCGTGGATCGAAAGAACaaga < 1:1667249/91‑1 (MQ=255) aaTGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACaaga > 2:1207783/1‑91 (MQ=255) aaTGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACaaga > 1:2681868/1‑91 (MQ=255) aTGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACaagaa < 1:1028134/91‑1 (MQ=255) tttGTGAATTATTTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTg > 2:1142692/1‑91 (MQ=255) tttGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTg < 1:1985693/91‑1 (MQ=255) ttGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTgg > 1:260906/1‑91 (MQ=255) tgtgAATTATTTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTGGc > 2:2265536/1‑91 (MQ=255) tgtgAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTGGc < 2:1861868/91‑1 (MQ=255) tgtgAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTGGc < 1:2172122/91‑1 (MQ=255) tgtgAAACAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACTAGAAGTGGc < 1:1950516/91‑1 (MQ=255) gtgAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTGGCa > 1:2774447/1‑91 (MQ=255) gtgAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTGGCa > 1:2189421/1‑91 (MQ=255) tgAATTATTTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTGGCaa > 1:2179439/1‑91 (MQ=255) tgAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTGGCaa > 1:1140398/1‑91 (MQ=255) tgAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTGGCaa > 1:2383343/1‑91 (MQ=255) gAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTGGCAAt < 2:3265387/91‑1 (MQ=255) gAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTGGCAAt < 1:1526523/91‑1 (MQ=255) aaaTAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTGGCAAtt < 1:833420/91‑1 (MQ=255) aataatTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTGGCAATTa > 1:722652/1‑91 (MQ=255) ataatTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTGGCAATTAt < 2:2388799/91‑1 (MQ=255) | TGATATTTGTTCAAATAATATTCGAAATTAAACTTTTTTGTATAGAATTTTCTTTATATCCTGAGAGACATGTACTATAATGTTTGTGAAATAATTCACAAAGTATAAAGGAGTGGTTGTATATGTTAACTATACCTGAAAAAGAAAATCGTGGATCGAAAGAACAAGAAGTGGCAATTAT > USA300TCH1516_ALE/170979‑171159 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |