| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 228,312 | T→C | 8.0% | intergenic (+158/+36) | ybbH_1 → / ← USA300TCH1516_00200 | putative HTH‑type transcriptional regulator YbbH/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 228,312 | 0 | T | C | 8.0% | 822.2 / 45.4 | 276 | intergenic (+158/+36) | ybbH_1/USA300TCH1516_00200 | putative HTH‑type transcriptional regulator YbbH/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (133/121); new base C (9/13); total (142/134) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.14e-01 | |||||||||||
Only 100 of 288 total aligned reads displayed.
TTGCTTGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTAAAA > USA300TCH1516_ALE/228222‑228402 | ttGCTTGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGt > 1:504408/1‑91 (MQ=255) tGCTTGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGtt > 1:694781/1‑91 (MQ=255) tGCTTGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGtt < 1:3409608/91‑1 (MQ=255) tGCTTGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGtt > 2:2159775/1‑91 (MQ=255) gCTTGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTc < 1:2809136/91‑1 (MQ=255) gCTTGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTc > 1:1710580/1‑91 (MQ=255) ttGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAg > 1:3695537/1‑91 (MQ=255) gatgaAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGAt < 1:29839/91‑1 (MQ=255) gatgaAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGAt < 1:30088/91‑1 (MQ=255) atgaAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGCTCaaatc < 2:3295349/91‑5 (MQ=255) aaaaTTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAg > 2:2201846/1‑91 (MQ=255) aaaTTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgc > 1:1826088/1‑91 (MQ=255) aaaTTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgc > 1:1352173/1‑91 (MQ=255) aaTTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgct < 2:698469/91‑1 (MQ=255) aaTTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgct > 2:3557347/1‑91 (MQ=255) ttgttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGCTCAAATCTGAacttt < 2:2889488/91‑1 (MQ=38) tgttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttg < 2:1863146/91‑1 (MQ=255) tgttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttg > 2:1390769/1‑91 (MQ=255) gttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgc > 2:3357007/1‑91 (MQ=255) ttgCTACGAGTTTGTAAAGCTGGCATAGAGGCTATTTTGAAGATGATAGAGGCGTGACAAATTAAAGCAAAGCTCAAATCTGAactttgct < 2:2932580/91‑1 (MQ=25) ttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGCTCAAATCTGAactttgct < 2:3884953/91‑1 (MQ=38) tgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgctt > 1:3548650/1‑91 (MQ=255) tgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgctt < 1:886213/91‑1 (MQ=255) cTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGCTCAAATCTGAactttgcttta < 2:2750062/91‑2 (MQ=37) tACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCttttt < 2:1662090/91‑1 (MQ=255) aCAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGCTCAAATCTGAactttgctttaat < 1:1178159/91‑4 (MQ=25) cAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGCTCAAATCTGAactttgctttaatt < 2:1011984/91‑5 (MQ=25) aGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCAt < 2:1594218/91‑1 (MQ=255) aGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCAt < 1:630507/91‑1 (MQ=255) gTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATa > 1:3432651/1‑91 (MQ=255) tttGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAg < 1:793546/91‑1 (MQ=255) ttGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGa < 2:1497422/91‑1 (MQ=255) ttacaaaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGAt > 2:1819550/5‑91 (MQ=255) tGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGAt < 1:2983634/91‑1 (MQ=255) tGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGAt > 1:892055/1‑91 (MQ=255) gTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATg > 2:3157173/1‑91 (MQ=255) gTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATg > 1:1522353/1‑91 (MQ=255) gTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATg > 1:3727520/1‑91 (MQ=255) tAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATgg > 1:396207/1‑91 (MQ=255) tAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATgg > 1:951424/1‑91 (MQ=255) aaaaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGa < 1:2451795/91‑1 (MQ=255) aaaaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGa > 1:455924/1‑91 (MQ=255) aaaaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGa < 1:2465009/91‑1 (MQ=255) aaaaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTAGAGCTTTGCTTTTTTCATAGATGGa > 1:3621370/1‑91 (MQ=255) cTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAAtt < 1:327476/91‑1 (MQ=255) tGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTa < 1:3386274/91‑1 (MQ=255) tGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTa < 2:3496697/91‑1 (MQ=255) tGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTa > 2:573948/1‑91 (MQ=255) ggCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTaa < 1:3669299/91‑1 (MQ=255) ggCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTaa > 2:2070575/1‑91 (MQ=255) gCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTaaa > 2:1236936/1‑91 (MQ=255) aTAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATg > 1:146986/1‑91 (MQ=255) agGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTga < 2:1753981/91‑1 (MQ=255) agGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTga < 2:1363583/91‑1 (MQ=255) ggCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTgaa < 1:2642545/91‑1 (MQ=255) ggCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTgaa < 2:843139/91‑1 (MQ=255) cTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTgaaga > 1:2200879/1‑91 (MQ=255) cTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTgaaga > 1:1010672/1‑91 (MQ=255) tATTTTGAAAATGATAAAGGCGTGACAAATTTAAGCAAAGTTCAGATTTGAGCTTTGGTTTTTTCATAGATGGAAATTAAATGCTgaagaa < 1:3102920/91‑1 (MQ=255) tATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTgaagaa < 2:1947025/91‑1 (MQ=255) aTTTTGAAAATGCTAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGaat > 1:2969920/1‑91 (MQ=255) aTTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGaat > 2:301551/1‑91 (MQ=255) aTTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGaat > 1:2774412/1‑91 (MQ=255) ttttGAAAATGATAAAGGCGTGACAAATTAAAGCACAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGaata > 2:641774/1‑91 (MQ=255) tGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAAtt > 2:843559/1‑91 (MQ=255) gAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAAttt < 2:1295396/91‑1 (MQ=255) aaaaTGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAAtttt > 2:3112109/1‑91 (MQ=255) aaaaTGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAAtttt < 1:1977184/91‑1 (MQ=255) aaaaTGATAAAGACGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGTAGAATAAtatt > 2:2523688/1‑91 (MQ=255) aaaTGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTa < 2:2619944/91‑1 (MQ=255) aaTGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTaa < 2:170237/91‑1 (MQ=255) gATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGc < 2:668014/91‑1 (MQ=255) aTAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCt > 2:1137810/1‑91 (MQ=255) aaaGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTaa > 2:3221857/1‑91 (MQ=255) aaaGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTaa > 1:2347041/1‑91 (MQ=255) aGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAAt > 2:2823308/1‑91 (MQ=255) ggCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATg > 2:2537372/1‑91 (MQ=255) cGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGaa < 2:2324760/91‑1 (MQ=255) cGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTGTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGaa < 2:459943/91‑1 (MQ=255) gTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAAc < 1:3867034/91‑1 (MQ=255) gTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAAc > 1:3033434/1‑91 (MQ=255) aCAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTaa > 2:2998680/1‑91 (MQ=255) aCAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTaa > 1:2949915/1‑91 (MQ=255) aCAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTaa > 2:1584387/1‑91 (MQ=255) cAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAAt > 2:1071399/1‑91 (MQ=255) aaaGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAg > 1:2578500/1‑91 (MQ=255) aaGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAgg > 2:191347/1‑91 (MQ=255) aaGCAAAGCTCAAATCTGAACTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAgg > 1:1599712/1‑91 (MQ=37) aGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGt < 1:2514560/91‑1 (MQ=255) gCAAAGCTCAAATCTGAACTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTg > 1:3339206/1‑91 (MQ=38) gCAAAGCTCAAATCTGAACTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTg > 2:368552/1‑91 (MQ=38) cAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGc < 2:454193/91‑1 (MQ=255) cAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGc > 1:1765671/1‑91 (MQ=255) aaaGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCt < 1:1324262/91‑1 (MQ=255) aaaGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCt < 1:1715374/91‑1 (MQ=255) aaGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGaat > 2:3635995/1‑55 (MQ=255) aaGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGaat < 1:3635995/55‑1 (MQ=255) aaGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTa < 1:1883646/91‑1 (MQ=255) aGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTaa > 2:877846/1‑91 (MQ=255) gTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTaaa > 1:1273419/1‑91 (MQ=255) | TTGCTTGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTAAAA > USA300TCH1516_ALE/228222‑228402 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |