| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 228,316 | G→A | 8.3% | intergenic (+162/+32) | ybbH_1 → / ← USA300TCH1516_00200 | putative HTH‑type transcriptional regulator YbbH/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 228,316 | 0 | G | A | 8.3% | 875.2 / 41.8 | 278 | intergenic (+162/+32) | ybbH_1/USA300TCH1516_00200 | putative HTH‑type transcriptional regulator YbbH/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (132/122); new base A (11/12); total (144/134) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 286 total aligned reads displayed.
TTGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTAAAAGCAA > USA300TCH1516_ALE/228226‑228406 | ttGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAg < 2:1799050/91‑1 (MQ=255) atgaAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGAtt > 1:170237/1‑91 (MQ=255) tgaAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGAttt > 2:1690740/1‑91 (MQ=255) aaaaTTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAg > 1:1794156/1‑91 (MQ=255) aaaTTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgc > 2:3885677/1‑91 (MQ=255) aaaTTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgc > 1:1352173/1‑91 (MQ=255) aaaTTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgc < 2:800507/91‑1 (MQ=255) aaTTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATCTGaact < 2:1710580/91‑4 (MQ=255) aTTGTTGCCACAAGTTTGTAAAACTGGGATAGAGGCTCTTTTGAACATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATATGAgctt > 2:274739/1‑91 (MQ=255) ttgttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGCTCAAATCTGAacttt < 2:2889488/91‑1 (MQ=38) tgttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGCTCAAATCTGAactttg < 2:1436455/91‑1 (MQ=38) tgttgCTAAAAGTTTATAAAACTGGCAGATAGGATATTTAGAAAAAGATAAAAACATAAAAAAATAAAGCAAAGTTCAGATTTGAgctttg < 2:680586/91‑1 (MQ=255) gttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgc > 2:3357007/1‑91 (MQ=255) gttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGCTCAAATCTGAactttgc < 2:3268212/91‑1 (MQ=38) ttgCTACGAGTTTGTAAAGCTGGCATAGAGGCTATTTTGAAGATGATAGAGGCGTGACAAATTAAAGCAAAGCTCAAATCTGAactttgct < 2:2932580/91‑1 (MQ=25) ttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgct > 1:935355/1‑91 (MQ=255) tgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgctt > 2:1214429/1‑91 (MQ=255) tgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgctt < 1:886569/91‑1 (MQ=255) tgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgctt > 1:3548650/1‑91 (MQ=255) aCAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGCTCAAATCTGAactttgctttaat < 1:1178159/91‑4 (MQ=25) cAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGCTCAAATCTGAactttgctttaatt < 2:1011984/91‑5 (MQ=25) aaGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCa < 2:1370710/91‑1 (MQ=255) aGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCAt < 1:630507/91‑1 (MQ=255) gTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATa > 2:2529900/1‑91 (MQ=255) gTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATa > 1:3432651/1‑91 (MQ=255) ttGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGa < 1:2608652/91‑1 (MQ=255) tGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGAt < 1:2983634/91‑1 (MQ=255) gTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATg > 1:1522353/1‑91 (MQ=255) gTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCCTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATg > 2:3192072/1‑91 (MQ=255) tAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATgg < 1:2719707/91‑1 (MQ=255) tAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATgg < 2:1653393/91‑1 (MQ=255) tAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATgg > 1:396207/1‑91 (MQ=255) aaaaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGa > 1:1718489/1‑91 (MQ=255) aaaaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGa > 1:3621738/1‑91 (MQ=255) aaaaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGa < 1:2455111/91‑1 (MQ=255) aaaaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGa > 1:455924/1‑91 (MQ=255) aaaaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGa < 1:3017766/91‑1 (MQ=255) aaaaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTAGAGCTTTGCTTTTTTCATAGATGGa > 1:3621370/1‑91 (MQ=255) aaaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGaa > 1:1829337/1‑91 (MQ=255) aaaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATCAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGaa > 1:3083874/1‑91 (MQ=255) aaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGaaa < 1:2356261/91‑1 (MQ=255) cTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAAtt < 1:327476/91‑1 (MQ=255) tGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTa < 2:3498266/91‑1 (MQ=255) tGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTa > 2:574011/1‑91 (MQ=255) tGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTa < 2:1957348/91‑1 (MQ=255) tGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTa < 2:3496697/91‑1 (MQ=255) tGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTa < 1:3386274/91‑1 (MQ=255) aTAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATg > 2:302672/1‑91 (MQ=255) aTAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATg > 1:146986/1‑91 (MQ=255) agGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGaaa < 2:1329680/80‑1 (MQ=255) ggCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTgaa < 2:2491421/91‑1 (MQ=255) ggCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTgaa < 1:1895213/91‑1 (MQ=255) cTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTgaaga > 1:2200373/1‑91 (MQ=255) cTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTgaaga > 1:1010672/1‑91 (MQ=255) tATTTTGAAAATGATAAAGGCGTGACAAATTTAAGCAAAGTTCAGATTTGAGCTTTGGTTTTTTCATAGATGGAAATTAAATGCTgaagaa < 1:3102920/91‑1 (MQ=255) aTTTTGAAAATGCTAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGaat > 1:2969920/1‑91 (MQ=255) ttttGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGaata < 1:2790616/91‑1 (MQ=255) ttttGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGaata > 2:1570206/1‑91 (MQ=255) tGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAAtt > 1:740082/1‑91 (MQ=255) aaaaTGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAAtttt < 1:1977184/91‑1 (MQ=255) aaaTGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTa < 2:2619944/91‑1 (MQ=255) aaaTGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTa < 1:2998906/91‑1 (MQ=255) aaaTGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTa < 1:2508196/91‑1 (MQ=255) gATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGc < 2:1882977/91‑1 (MQ=255) aTAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCt > 2:1136720/1‑91 (MQ=255) aGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAAt > 2:2823308/1‑91 (MQ=255) ggCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATg > 1:87182/1‑91 (MQ=255) ggCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATg > 2:2537372/1‑91 (MQ=255) gTGACAAATTAAAGCAAAGTTCAGGTTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAAc > 2:2084653/1‑91 (MQ=255) tGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACt < 2:2193972/91‑1 (MQ=255) aCAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTaa > 1:2949520/1‑91 (MQ=255) aCAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTaa > 2:1584959/1‑91 (MQ=255) aCAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTaa > 2:2998702/1‑91 (MQ=255) cAAATTCAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGTAGAAGAATTATTTTAATGCCAAATGAACTAAt > 2:553509/1‑91 (MQ=255) cAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAAt > 2:1071399/1‑91 (MQ=255) aaaTTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATa < 2:643023/91‑1 (MQ=255) aaaTTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATa < 1:384474/91‑1 (MQ=255) aaaTTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATa < 1:3695264/91‑1 (MQ=255) aaTTACAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATAc < 2:3146652/91‑1 (MQ=255) aaTTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATAc > 2:843471/1‑91 (MQ=255) aaTTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATAc > 1:3652027/1‑91 (MQ=255) ttAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGa > 2:2971010/1‑91 (MQ=255) aaaagcaaagcTCAAATCTGAACTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGaa > 2:3670286/2‑91 (MQ=37) aaaGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAg < 1:2565087/91‑1 (MQ=255) aaGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAgg > 2:191347/1‑91 (MQ=255) aaGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAgg < 1:2215014/91‑1 (MQ=255) aaGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAgg < 1:3708674/91‑1 (MQ=255) aaGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAgg < 2:1826088/91‑1 (MQ=255) aaGCAAAGCTCAAATCTGAACTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAgg > 1:1599712/1‑91 (MQ=37) aGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGt > 1:532276/1‑91 (MQ=255) gCAAAGCTCAAATCTGAACTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTg > 1:3339206/1‑91 (MQ=38) cAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGc < 2:455924/91‑1 (MQ=255) aaaGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCt < 1:1324262/91‑1 (MQ=255) aGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTaa > 2:877846/1‑91 (MQ=255) gTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTaaa > 1:1273419/1‑91 (MQ=255) ttCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTaaaa > 2:3769505/1‑91 (MQ=255) ttCAGATTTGAGCTTTGCTTTATTCATAGATGGAAATTAAATGCTGAAGAATACTTTTAATGCTACATGAACTAATACGAAGGTGCtccaa > 2:362880/1‑87 (MQ=255) tCAGATTTGAGCTTTGCTTTTTTCTTCGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTAAAAg > 2:2215207/1‑91 (MQ=255) tCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTAAAAg > 2:1276768/1‑91 (MQ=255) gATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTAAAAGCaa > 2:864051/1‑91 (MQ=255) | TTGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTAAAAGCAA > USA300TCH1516_ALE/228226‑228406 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |