| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 265,628 | A→T | 6.7% | intergenic (+28/+136) | ugpQ_2 → / ← scn_1 | Glycerophosphodiester phosphodiesterase, cytoplasmic/Staphylococcal complement inhibitor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 265,628 | 0 | A | T | 6.7% | 656.6 / 24.5 | 196 | intergenic (+28/+136) | ugpQ_2/scn_1 | Glycerophosphodiester phosphodiesterase, cytoplasmic/Staphylococcal complement inhibitor |
| Reads supporting (aligned to +/- strand): ref base A (82/99); new base T (9/4); total (91/105) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.49e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 200 total aligned reads displayed.
ATTAAAGAAGAAAAGAAAGACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCATATGACAAGTATTTGTAT > USA300TCH1516_ALE/265538‑265718 | tAAAGAAGAAAAGAAAGACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAga < 2:764310/91‑1 (MQ=255) tAAAGAAGAAAAGAAAGACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAga > 1:192195/1‑91 (MQ=255) aaaGAAGAAAAGAAAGACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAgat < 1:2397050/91‑1 (MQ=255) aagaagAAAAGAAAGACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAgatg > 2:2641975/1‑91 (MQ=255) gaagaaAAGAAAGACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAgatgat > 2:931554/1‑91 (MQ=255) aagaaaagaaAGACGAAACATAGCTCGATCGTTCTATAAGAATTTTGTTGGAATAATATTAACAAAGACCTCTAAAGTTATCAAGATGATa < 2:2954137/91‑1 (MQ=255) aagaaaagaaAGACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATa < 1:2628814/91‑1 (MQ=255) aagaaaagaaAGACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATa < 2:1628735/91‑1 (MQ=255) agaaaagaaaGACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATAc < 1:2691/91‑1 (MQ=255) gaaaagaaaGACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATAcc > 1:1681178/1‑91 (MQ=255) gaaaagaaaGACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATAcc > 1:2261726/1‑91 (MQ=255) gaaaagaaaGACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATAcc > 1:3828904/1‑91 (MQ=255) gaaaagaaaGACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATAcc > 1:1385700/1‑91 (MQ=255) gaaaagaaaGACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATAcc > 2:942749/1‑91 (MQ=255) aaaagaaaGACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCt > 2:3425475/1‑91 (MQ=255) aaagaaagACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCtt < 2:2158864/91‑1 (MQ=255) aaagaaagACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCtt > 2:546589/1‑91 (MQ=255) gaaagaCGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCag < 2:3722809/91‑1 (MQ=255) aaagaCGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCaga > 2:1454732/1‑91 (MQ=255) aagaCGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCagag > 1:1496177/1‑91 (MQ=255) aagaCGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCagag < 1:1995411/91‑1 (MQ=255) aagaCGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCagag < 1:3844891/91‑1 (MQ=255) agaCGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAgg < 1:488748/91‑1 (MQ=255) agaCGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAgg < 1:669085/91‑1 (MQ=255) agaCGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAgg < 1:2333686/91‑1 (MQ=255) agaCGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAgg > 1:2236099/1‑91 (MQ=255) agaCGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAgg < 1:1571186/91‑1 (MQ=255) gaCGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGt > 1:3262299/1‑91 (MQ=255) aCGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTc > 2:1938856/1‑91 (MQ=255) cGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCt > 2:1909156/1‑91 (MQ=255) cGAAACATACTTCGATCGTTCTATAAGAATGTTGTGTGAATAATATAAACAAAGACCTCTAAAGGTATCATCTTGATAACTTTAGAGGTCt < 2:2828277/91‑1 (MQ=18) gAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCtt < 2:201724/91‑1 (MQ=255) aTACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTGAAGGTATCATCTTGATAACTTTAGAGGTCtttgttt < 2:3868254/91‑5 (MQ=17) aTACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTaa < 1:65290/91‑1 (MQ=255) tACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAAt < 2:1813828/91‑1 (MQ=255) aCTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATg > 1:1382630/1‑91 (MQ=255) tCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTg < 2:3763880/91‑1 (MQ=255) cGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGttac < 2:453932/91‑3 (MQ=255) cGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGc < 2:337256/91‑1 (MQ=255) cGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGc > 1:1608086/1‑91 (MQ=255) gATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGcc > 1:197323/1‑91 (MQ=255) gATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAACACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGcc > 2:3193163/1‑91 (MQ=255) tCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCAt > 2:1351898/1‑91 (MQ=255) cGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATc < 1:183919/91‑1 (MQ=255) gTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGcctatc < 1:1073024/91‑5 (MQ=255) gTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCt > 2:1836901/1‑91 (MQ=255) gTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCt > 2:1333184/1‑91 (MQ=255) ttCTATAAGAATTTTGTTTGAATAATATAAACAAAGGCCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTa < 2:3058870/91‑1 (MQ=255) ttCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTa < 2:91923/91‑1 (MQ=255) ttCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTa < 1:1405227/91‑1 (MQ=255) tCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTAt > 1:1449476/1‑91 (MQ=255) ataAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATggg > 2:1226507/1‑91 (MQ=255) aGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATa < 2:2278186/91‑1 (MQ=255) aaTTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAgg < 1:1031212/91‑1 (MQ=255) aaTTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAgg < 2:1375816/91‑1 (MQ=255) aaTTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAgg < 1:2258107/91‑1 (MQ=255) ttttGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCa < 2:3541704/91‑1 (MQ=255) ttttGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCa > 2:734445/1‑91 (MQ=255) tttgtttgAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCaa < 2:2808322/91‑1 (MQ=255) tttgtttgAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCaa < 1:39476/91‑1 (MQ=255) ttgtttgAATAATATAGACAAAGACCTCGAAAGTTATCAGGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAAt < 1:915408/91‑1 (MQ=255) ttgtttgAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAAt > 1:630831/1‑91 (MQ=255) tgtttgAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATc < 2:2713881/91‑1 (MQ=255) gtttgAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCg < 1:2161866/91‑1 (MQ=255) tttgAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTCATGTTGCCATCTATGGGATAGGCAATCGt > 1:3106673/1‑91 (MQ=255) tttgAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGt > 2:2005971/1‑91 (MQ=255) ttgAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGtt > 1:1213376/1‑91 (MQ=255) ataataTAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCAt < 2:1017139/91‑1 (MQ=255) taataTAAACAAAGACCTCTAAAGTTATCAAGATGATCCCTTCAGAGGACTTTTTAATGTTGCCAGCTATGGGATAGGCAATCGTCTCAtt > 1:3615062/1‑91 (MQ=255) taataTAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCAtt < 1:2816926/91‑1 (MQ=255) taataTAAACAAAGACCTCTAAAGTTATCAAGATGACACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCAtt < 1:2085654/91‑1 (MQ=255) aataTAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCAtac < 2:2447456/91‑3 (MQ=255) tataAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGt > 1:1087140/1‑91 (MQ=255) ataAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGtt < 2:432866/91‑1 (MQ=255) aaaCAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTta < 1:3555594/91‑1 (MQ=255) aaaCAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTta > 2:1768182/1‑91 (MQ=255) aaCAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCACTCGTTTCATTCGTTtat > 1:3320769/1‑91 (MQ=255) aaCAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTtat > 1:2589778/1‑91 (MQ=255) aCAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTtata < 1:81132/91‑1 (MQ=255) cAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTatat < 2:3023634/91‑1 (MQ=255) aaaGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATAtt > 2:1745772/1‑91 (MQ=255) aaGACCTCTGAAGGTATCATCTTGATAACTTTAGAGGACTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTc > 1:3270200/1‑91 (MQ=18) aaGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTc < 1:769521/91‑1 (MQ=255) gACCTCTGAAGGTATCATCTTGATAACTTTAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCat > 2:488524/1‑91 (MQ=21) aCCTCTGAAGGTATCATCTTGATAACTTTAGAGGACTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCata > 2:358108/1‑91 (MQ=21) aCCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATAttattc > 2:2141065/1‑87 (MQ=255) ccTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCatat < 1:182556/91‑1 (MQ=255) ccTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCatat < 1:182047/91‑1 (MQ=255) ctctAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCATATg < 1:3425475/91‑1 (MQ=255) tctAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCATATGa > 2:3462280/1‑91 (MQ=255) tctAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCATATGa > 1:2622619/1‑91 (MQ=255) tAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCATATGACa > 2:1161423/1‑91 (MQ=255) tAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCATATGACa > 2:806904/1‑91 (MQ=255) aaaGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCATATGACaa < 2:2491648/91‑1 (MQ=255) aaGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCATATGACAAg > 1:2917740/1‑91 (MQ=255) aaGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCATATGACAAg < 1:286998/91‑1 (MQ=255) gTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCATATGACAAGTa > 1:3380829/1‑91 (MQ=255) ttATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCATATGACAAGTAt < 1:2641975/91‑1 (MQ=255) aGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCATATGACAAGTATTTGTAt < 2:1661943/91‑1 (MQ=255) aGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCATATGACAAGTATTTGTAt < 1:1333184/91‑1 (MQ=255) | ATTAAAGAAGAAAAGAAAGACGAAACATACTTCGATCGTTCTATAAGAATTTTGTTTGAATAATATAAACAAAGACCTCTAAAGTTATCAAGATGATACCTTCAGAGGTCTTTTTAATGTTGCCATCTATGGGATAGGCAATCGTTTCATTCGTTTATATTCATATGACAAGTATTTGTAT > USA300TCH1516_ALE/265538‑265718 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |