| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 428,608 | C→G | 5.6% | G228A (GGT→GCT) ‡ | ahpF ← | Alkyl hydroperoxide reductase subunit F |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 428,608 | 0 | C | G | 5.6% | 613.3 / 19.0 | 179 | G228A (GGT→GCT) ‡ | ahpF | Alkyl hydroperoxide reductase subunit F |
| Reads supporting (aligned to +/- strand): ref base C (82/87); new base G (3/7); total (85/94) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.36e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.83e-01 | |||||||||||
Only 100 of 182 total aligned reads displayed.
TTGTTTCTTTAACAGTAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTATTTTCAAACTCAG > USA300TCH1516_ALE/428519‑428698 | ttgttTCTTTAGCAGTAATGAAGATCTCAATACCAGCAGTATCATTAACTTGGCCACCGTTACGATCAGCAACTATACCAGTACGTAAAcc < 2:2965766/91‑1 (MQ=255) tgttTCTTTAACAGTAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCt < 2:2885332/91‑1 (MQ=255) tgttTCTTTAACAGTAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCt > 1:2504178/1‑91 (MQ=255) gttTCTTTAACAGTAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCtt > 1:2454483/1‑91 (MQ=255) tttAACAGTAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGt > 2:3026336/1‑91 (MQ=255) ttAACAGTAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTg > 1:2452541/1‑91 (MQ=255) ttAACAGTAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGCACGTAAAGGTTTACGta < 2:1887953/91‑2 (MQ=255) tAACAGTAGTGGAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGCACGTAAAGGTTTACGtac < 2:2752381/91‑3 (MQ=255) tAACAGTAATGAAGTTCTCAATACCAGCGGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGCACGTAAAGGTTTACGtac < 2:2807069/91‑3 (MQ=255) tAACAGTAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGc < 2:1287920/91‑1 (MQ=255) aaCAGTAATGAAGTTCTCAATGCCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCt < 2:1341974/91‑1 (MQ=255) aCAGTAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATTCGATCAGCAACTATACCAGCACGTAAAGGTTTACGta < 1:3279780/88‑2 (MQ=255) aCAGTAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCtg > 1:1048641/1‑91 (MQ=255) cAGTAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCtgt > 1:409795/1‑91 (MQ=255) aGTAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCtgtg < 1:1407645/91‑1 (MQ=255) aGTAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCtgtg < 1:1358139/91‑1 (MQ=255) gTAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTgtgt > 1:398662/1‑91 (MQ=255) gTAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTgtgt < 1:3528770/91‑1 (MQ=255) tAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTa > 2:2507221/1‑91 (MQ=255) aaTGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTaa > 2:145895/1‑91 (MQ=255) aTGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTaaa > 2:3040203/1‑91 (MQ=255) tGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAAt > 1:448645/1‑91 (MQ=255) tGAAGTTCTCAATACCAGCAGTATCATTAACCTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAAt < 1:2048445/91‑1 (MQ=255) aaGTTCTCAATACCAGCAGTATCATTAACTTGGTCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCg < 1:3172212/91‑1 (MQ=255) aGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGc > 1:1509059/1‑91 (MQ=255) aGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGc < 2:3390862/91‑1 (MQ=255) gTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCt > 1:1622959/1‑91 (MQ=255) gTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCt > 1:1622908/1‑91 (MQ=255) tcAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCAc < 1:592227/91‑1 (MQ=255) tcAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCAc > 1:2903174/1‑91 (MQ=255) cAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACt < 1:3354063/91‑1 (MQ=255) cAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACt < 2:3297149/91‑1 (MQ=255) aCCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCa < 1:1617200/91‑1 (MQ=255) aCCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCa < 2:3154836/91‑1 (MQ=255) cagcagTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACt < 2:3529741/91‑1 (MQ=255) cagcagTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACt < 1:1981815/91‑1 (MQ=255) agTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTgtgt > 2:3790146/1‑68 (MQ=255) agTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCa > 1:782247/1‑91 (MQ=255) agTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCa > 1:3689324/1‑91 (MQ=255) agTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCa > 1:3805279/1‑91 (MQ=255) gTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAg < 2:664690/91‑1 (MQ=255) gTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAg < 1:1848393/91‑1 (MQ=255) tCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGac > 2:3820437/1‑91 (MQ=255) cATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGacc > 1:2282409/1‑91 (MQ=255) ttAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGaccac > 2:831018/1‑91 (MQ=255) tAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGaccacc > 2:921248/1‑91 (MQ=255) tAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGaccacc < 2:434237/91‑1 (MQ=255) aaCTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGaccacca < 1:2724536/91‑1 (MQ=255) aCTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGaccaccac < 1:1490534/91‑1 (MQ=255) aCTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGaccaccac > 2:1428154/1‑91 (MQ=255) cTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGaccaccacc < 1:2846295/91‑1 (MQ=255) cTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGaccaccacc < 1:245860/91‑1 (MQ=255) cTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGaccaccacc < 1:2373747/91‑1 (MQ=255) tGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCaa > 2:1557625/1‑91 (MQ=255) ggCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAAc < 2:2399645/91‑1 (MQ=255) gCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACg > 1:2090663/1‑91 (MQ=255) gCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACg > 2:2615863/1‑91 (MQ=255) aCCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGCGGAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGAtt > 2:3661236/1‑91 (MQ=255) ccGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTa > 2:3535506/1‑91 (MQ=255) gATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAg > 2:3052617/1‑91 (MQ=255) gATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAg > 1:485519/1‑91 (MQ=255) tACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGAc < 1:660230/91‑1 (MQ=255) aCGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGAca < 2:1187442/91‑1 (MQ=255) cGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGCCCACCACCAACGATTAAGAcat > 2:789386/1‑91 (MQ=255) gATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGAcatc > 1:1043974/1‑91 (MQ=255) gATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGAcatc > 2:2121105/1‑91 (MQ=255) aTCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGAcatca > 1:3576259/1‑91 (MQ=255) tCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCTCTACCACTAGCAGGACCACCACCAACGATTAAGAcatcat < 2:3182944/91‑1 (MQ=255) cAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATa < 2:84736/91‑1 (MQ=255) cAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATa < 1:3402924/91‑1 (MQ=255) gCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAg < 2:3752021/91‑1 (MQ=255) gCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAg < 2:3532209/91‑1 (MQ=255) cAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAgg < 1:959205/91‑1 (MQ=255) cAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAgg < 1:1776270/91‑1 (MQ=255) aaCTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATACGGt > 2:591614/1‑91 (MQ=255) cTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTc < 1:1253382/91‑1 (MQ=255) cTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTc > 2:3280448/1‑91 (MQ=255) ataCCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCtt > 1:2415298/1‑91 (MQ=255) taCCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCttt < 1:1386811/91‑1 (MQ=255) aCCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTa < 2:782247/91‑1 (MQ=255) aCCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTa < 2:3689324/91‑1 (MQ=255) aCCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTa > 1:3638793/1‑91 (MQ=255) ccAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTAt > 2:2189736/1‑91 (MQ=255) cAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTAtt > 2:1737266/1‑91 (MQ=255) agcaCGTAAAGGTTTACGTACTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTAttt > 1:744396/4‑91 (MQ=255) aGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTAttt > 2:3668567/1‑91 (MQ=255) aGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTAttt < 1:3755958/91‑1 (MQ=255) tACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTATTTTc < 2:1028402/91‑1 (MQ=255) aCGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTATTTTCa < 1:1750793/91‑1 (MQ=255) aCGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTATTTTCa < 2:828352/91‑1 (MQ=255) cGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTATTTTCaa < 2:2026974/91‑1 (MQ=255) tAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTATTTTCAAAc < 1:1723177/91‑1 (MQ=255) tAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGCTTCTTTATTTTCAAAc > 2:3713476/1‑91 (MQ=255) aaaCCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTATTTTCAAACt < 1:2528073/91‑1 (MQ=255) aaCCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTATTTTCAAACTc < 1:1506857/91‑1 (MQ=255) aaCCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTATTTTCAAACTc > 1:1408217/1‑91 (MQ=255) aaCCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATAAAGACATCATAAGGTTCTTTATTTTCAAACTc < 2:1771582/91‑1 (MQ=255) aCCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTATTTTCAAACTCa < 2:741358/91‑1 (MQ=255) ccTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTATTTTCAAACtagt < 2:3214013/91‑4 (MQ=255) ccTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTATTTTCAAACTCAg > 1:3228251/1‑91 (MQ=255) | TTGTTTCTTTAACAGTAATGAAGTTCTCAATACCAGCAGTATCATTAACTTGGCCACCGATACGATCAGCAACTATACCAGTACGTAAACCTTTACGTGCTGTGTAAATCGCTGCACTACCACTAGCAGGACCACCACCAACGATTAAGACATCATAAGGTTCTTTATTTTCAAACTCAG > USA300TCH1516_ALE/428519‑428698 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |