| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 514606 | NA (NA) | 72 (0.440) | 20/166 | 12.3 | NA | intergenic (+2674/‑4089) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 514610 | NA (NA) | intergenic (+2678/‑4085) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 222 total aligned reads displayed.
TAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/514510‑514606‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtgttcTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTAC < USA300TCH1516_ALE/514610‑514521 TAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTA < 1:1211405/91‑1TAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTA < 2:2410494/91‑1TAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTA > 1:1304112/1‑91TAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTA > 2:1622690/1‑91TAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTA > 2:642687/1‑91TAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAACAAATAATC‑‑GCTA > 2:2574315/1‑91 AGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAG > 2:1446343/1‑91 AGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAG > 2:1967319/1‑91 AGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAG > 2:208797/1‑91 AGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAG < 1:2800546/91‑1 AGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAG < 2:479523/91‑1 AGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAG > 1:1426810/1‑91 AGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAG < 2:641578/91‑1 AGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAG > 2:814211/1‑91 GATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGT > 2:2936815/1‑91 GATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGT < 1:1208543/91‑1 GATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGT > 2:2224063/1‑91 GATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGT > 1:2305465/1‑91 GATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGT > 2:2303084/1‑91 ATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTG > 2:2509415/1‑91 ATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTG < 1:622043/91‑1 ATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTG < 1:1105845/91‑1 ATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTG > 1:2587430/1‑91 ATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTG > 1:68108/1‑91 TAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGT < 1:907245/91‑1 TAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGT > 2:1586348/1‑91 TAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGT < 1:627098/91‑1 TAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGT > 2:1368171/1‑91 TAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGT < 2:1939229/91‑1 TAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGT > 1:2028782/1‑91 TAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGT > 2:596848/1‑91 TAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGT < 2:66679/91‑1 TAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGT > 2:74631/1‑91 TAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTGGAATTCATAAGAAATAATC‑‑GCTAGTGT > 2:969025/1‑91 AAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTT > 2:1837670/1‑91 AAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTT > 2:434973/1‑91 AAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTT > 1:1753946/1‑91 AAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTT < 1:651789/91‑1 AAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTT > 1:575073/1‑91 AGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTC > 2:2168831/1‑91 AGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTC < 2:117809/91‑1 GTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCT < 2:1742568/91‑1 TAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTT < 1:79262/91‑1 TAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTCGAATTCATAAGAAATAATC‑‑GCTAG < 2:449255/84‑1 AAGTAAAGTATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAGGCTTGAATGCATAAGAAATAATC‑‑GCTAGTGTGCTTT < 2:1929577/91‑1 AAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTT < 2:1141636/91‑1 AAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTT < 2:1725631/91‑1 AAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTT < 1:2461054/91‑1 AAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTT < 1:948487/91‑1 AGTAAAATGTAGATGTTACCAAGCAAAACCGAGTGAATAAAGAGTTGTAAATAAGCTTGGATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTC < 2:2841782/91‑1 AGTAAAATATAGATTTTACCAAGCAAAGCCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTC < 1:1840881/91‑1 AGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTC < 2:360910/91‑1 AGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTC < 2:2037794/91‑1 AGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTC < 1:2209539/91‑1 AGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTC < 1:2064333/91‑1 AGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTC < 2:868637/91‑1 AGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTC < 2:2948493/91‑1 GTAAAGTATAGATTTTACCAAGCAACACCGAGTGAATAAGGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTCG < 1:2886849/91‑1 GTAAAATTTAGATCTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTCG < 1:1547405/91‑1 GTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTCG < 1:1480187/91‑1 GTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTCG < 1:1385989/91‑1 GTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTCG < 1:723642/91‑1 TAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTCGA < 2:2517988/91‑1 AAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTCGAA < 2:1580707/91‑1 AAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTCGAA < 1:1706221/91‑1 AAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTCGAA < 1:1055648/91‑1 AAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTCGAA < 1:1408974/91‑1 AAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCGAGTGTTCTTTCGAAC < 1:388213/91‑1 ATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTCGAACAC < 1:3043495/91‑1 TATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTCGAACACT < 2:2499851/91‑1 AGATTTTACCAAGCAAAACTGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTCGAACACTAGC < 2:2662062/91‑1 ATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCTTGTGAGTGTTCTTTCGAACACTAGC < 2:1373877/91‑1 taaCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTCGAACACTAGCGATTAT < 2:2828414/88‑1 GCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCGTGAATTCATAAGAAATAATC‑‑GCTAGTGTTTTTTCGAACACTAGCGATTATTTCTTA < 2:2567418/91‑1 AGCTTGAATTCATAAGAAATAATC‑‑GCGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTC < 1:2870641/91‑1 CTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCAC < 1:3009861/91‑1 gtgcGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCT < 1:2491709/87‑1 AGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAACACTCTTTATCCACGCGGTTTTGCTTGGTAAAACCTAca > 2:2986710/1‑89 AGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATA > 2:596471/1‑91 AGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATA < 1:222072/91‑1 AGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATA > 1:2624983/1‑91 aTGTTCTTTCGAACACTAGCGATTATTTCTTATGAAGTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATAT < 2:3071309/90‑1 GTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATAT < 1:712254/91‑1 GTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATAT > 1:1988360/1‑91 GTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATAT > 2:2503977/1‑91 GTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATAT > 1:472077/1‑91 GTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATAT > 2:940264/1‑91 GTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATAT > 2:2199330/1‑91 GTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATAT < 1:2730707/91‑1 TGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATT > 1:2783691/1‑91 GTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTT < 1:1236162/91‑1 TTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTT > 1:1597197/1‑91 TTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTT < 2:1246075/91‑1 TTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTT > 1:337544/1‑91 TCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTA > 2:2683785/1‑91 CTTTGGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTGTAC > 1:2438351/1‑91 CTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTAC < 1:106442/91‑1 CTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTAC < 2:1079403/91‑1 CTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTAC < 1:2956726/91‑1 CTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTATTTATTCTCTCGGTTTTGCTTGGTAAAATCTATATTTTAC < 2:2538813/91‑1 TAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATC‑‑GCTAGTGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/514510‑514606‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtgttcTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTAC < USA300TCH1516_ALE/514610‑514521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |