| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | CP000731 | 6,552 | +TCTCCAGGCACTTGTGCATATTCTGAAA | intergenic (+1069/‑419) | cadX → / → USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 6552 | 0 (0.000) | 286 (0.830) +TCTCCAGGCACTTGTGCATATTCTGAAA |
104/124 | 0.2 | 100% | intergenic (+1069/‑419) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| ? | CP000731 | 6553 = | 0 (0.000) | intergenic (+1070/‑418) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator | |||||
Only 100 of 412 total aligned reads displayed.
TTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACA > CP000731/6462‑6641 | tCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACt > 2:1405771‑M1/1‑90 (MQ=255) tCAAAAATTGATAAGGCGGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACt < 1:1211635‑M1/91‑2 (MQ=255) aaaaTTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctc < 2:352066‑M1/91‑5 (MQ=255) aaTTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctcca < 2:431911‑M1/91‑7 (MQ=255) aaTTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctcca > 1:1972716‑M1/1‑85 (MQ=255) ttGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccagg < 2:2741118‑M1/91‑9 (MQ=255) ttGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccagg < 2:1163088‑M1/91‑9 (MQ=255) ttGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccagg < 2:1815349‑M1/91‑9 (MQ=255) tGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggc > 1:2105281‑M1/1‑82 (MQ=255) aTAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcac > 1:849117‑M1/1‑80 (MQ=255) tAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcact > 2:1041468‑M1/1‑79 (MQ=255) aaTGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcactt < 2:837254‑M1/91‑14 (MQ=255) gctgcCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtg < 2:480738‑M1/91‑17 (MQ=255) ctgcCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgc < 2:1334589‑M1/91‑18 (MQ=255) ctgcCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgc < 2:2498608‑M1/91‑18 (MQ=255) tgcCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgca < 1:92209‑M1/91‑19 (MQ=255) gcCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcat < 2:612754‑M1/91‑20 (MQ=255) ccGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcata < 2:1308679‑M1/91‑21 (MQ=255) ccGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcata > 1:3017124‑M1/1‑71 (MQ=255) gTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatatt < 1:2717629‑M1/91‑23 (MQ=255) gTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTCGGGAATAGGCACAATCCACtctccaggcacttgtgcatatt > 2:2717470‑M1/1‑69 (MQ=255) gTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTAGGGAATAGGAACAATCCACtctccaggcacttgtgcatatt < 1:2683782‑M1/91‑23 (MQ=255) aaaaCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattct < 1:1822949‑M1/91‑25 (MQ=255) aaaCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctg < 2:1978985‑M1/91‑26 (MQ=255) aaaCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctg < 1:1379915‑M1/91‑26 (MQ=255) aaaCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctg < 1:696806‑M1/91‑26 (MQ=255) aaaCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctg < 1:3087911‑M1/91‑26 (MQ=255) aaCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctga < 1:1067970‑M1/91‑27 (MQ=255) aCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaa > 1:1970123‑M1/1‑64 (MQ=255) aCCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaa > 1:2272301‑M1/1‑64 (MQ=255) cGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaa > 1:1583340‑M1/1‑62 (MQ=255) cGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaa > 2:2311245‑M1/1‑62 (MQ=255) gCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatc < 2:2991249‑M1/91‑32 (MQ=255) cTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatcc > 2:2794957‑M1/1‑59 (MQ=255) tgtgCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatcca < 1:1505129‑M1/91‑34 (MQ=255) gtgCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccac > 1:64163‑M1/1‑57 (MQ=255) gtgCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccac > 2:2657202‑M1/1‑57 (MQ=255) tgCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacc < 2:3082877‑M1/91‑36 (MQ=255) atatACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgta < 1:1475253‑M1/91‑40 (MQ=255) tataCCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtat < 2:159756‑M1/91‑41 (MQ=255) tataCCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtat < 1:999395‑M1/91‑41 (MQ=255) aCCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtg < 2:1486562‑M1/91‑44 (MQ=255) aCCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtg > 2:2425751‑M1/1‑48 (MQ=255) cATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtc > 1:3005562‑M1/1‑46 (MQ=255) cATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtc < 1:1561811‑M1/91‑46 (MQ=255) tAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcac > 1:596297‑M1/1‑44 (MQ=255) tAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcac > 1:343194‑M1/1‑44 (MQ=255) tAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcac < 1:2016523‑M1/91‑48 (MQ=255) tAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcac < 2:2832027‑M1/91‑48 (MQ=255) tAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcac > 2:1703630‑M1/1‑44 (MQ=255) aGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacg > 2:522424‑M1/1‑43 (MQ=255) gACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgc > 2:1524685‑M1/1‑42 (MQ=255) ctctTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgcca > 1:1083227‑M1/1‑40 (MQ=255) tctTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaa < 2:1947176‑M1/91‑53 (MQ=255) ctTTAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaac > 1:2346052‑M1/1‑38 (MQ=255) tttAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaaca < 2:39536‑M1/91‑55 (MQ=255) ttAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgtcaacat < 1:2407953‑M1/91‑56 (MQ=255) tAATAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatc < 1:1286632‑M1/91‑57 (MQ=255) aaTAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatca < 1:1736863‑M1/91‑58 (MQ=255) aTAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcat > 2:813789‑M1/1‑33 (MQ=255) aTAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcat > 1:503789‑M1/1‑33 (MQ=255) tAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcata > 1:2590529‑M1/1‑32 (MQ=255) tAGACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcata < 1:2314116‑M1/91‑60 (MQ=255) gACATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataac > 1:467901‑M1/1‑30 (MQ=255) cATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataacca < 2:875227‑M1/91‑64 (MQ=255) cATTTCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataacca < 2:1877929‑M1/91‑64 (MQ=255) tttCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagt < 2:1639026‑M1/91‑66 (MQ=255) tttCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagt > 1:438486‑M1/1‑26 (MQ=255) ttCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagta < 1:1330950‑M1/91‑67 (MQ=255) ttCTTGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagta < 1:2737413‑M1/91‑67 (MQ=255) ttGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaact < 1:728980‑M1/91‑70 (MQ=255) tGGGGAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaacta < 2:1458192‑M1/91‑71 (MQ=255) ggggAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaa < 2:2092983‑M1/91‑72 (MQ=255) ggggAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaa > 2:1236470‑M1/1‑20 (MQ=255) gggAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaat > 1:2783922‑M1/1‑19 (MQ=255) ggAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaata > 2:2237083‑M1/1‑18 (MQ=255) ggAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaata > 2:2896443‑M1/1‑18 (MQ=255) gAATAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatac < 2:577733‑M1/91‑75 (MQ=255) aTAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacat > 1:827239‑M1/1‑15 (MQ=255) tAGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacatt < 2:2151276‑M1/91‑78 (MQ=255) aGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacatta > 2:2195966‑M1/1‑13 (MQ=255) aGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacatta > 2:724534‑M1/1‑13 (MQ=255) aGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacatta > 1:1779605‑M1/1‑13 (MQ=255) aGGAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacatta > 1:167277‑M1/1‑13 (MQ=255) ggAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattat < 2:2352403‑M1/91‑80 (MQ=255) gAACAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatc > 2:1065749‑M1/1‑11 (MQ=255) aaCAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcg < 1:1003619‑M1/91‑82 (MQ=255) aCAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtctgtgtcacgccaacatcataaccagtaactaatacattatcgc > 1:2472307‑M1/1‑9 (MQ=255) aCAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgc < 2:3054820‑M1/91‑83 (MQ=255) aCAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgc > 2:1209112‑M1/1‑9 (MQ=255) aCAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagcaactaatacattatcgc > 1:2650243‑M1/1‑9 (MQ=255) cAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgcc < 1:2218518‑M1/91‑84 (MQ=255) cAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgcc > 1:296085‑M1/1‑8 (MQ=255) cAATCCACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgcc > 2:944540‑M1/1‑8 (MQ=255) ccACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttct < 1:554602‑M1/91‑88 (MQ=255) ccACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttct > 1:52126‑M1/1‑4 (MQ=255) cACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctt > 1:119301‑M1/1‑3 (MQ=255) cACtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttctt > 1:1430072‑M1/1‑3 (MQ=255) aCtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttcttt > 2:2070801‑M1/1‑2 (MQ=255) aCtctccaggcacttgtgcatattctgaaaatccacctgtatgtgtcacgccaacatcataaccagtaactaatacattatcgccttcttt > 1:1907466‑M1/1‑2 (MQ=255) | TTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACA > CP000731/6462‑6641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |