| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,372,419 | 0 | C | T | 21.3% | 492.3 / 123.6 | 231 | intergenic (+170/+22) | USA300TCH1516_02262/pbuG | hypothetical protein/Guanine/hypoxanthine permease PbuG |
| Reads supporting (aligned to +/- strand): ref base C (88/93); new base T (24/25); total (112/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.36e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 234 total aligned reads displayed.
ATATTTAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTC > USA300TCH1516_ALE/2372329‑2372509 | tatTTAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCa < 2:1489568/91‑1 (MQ=255) atTTAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAg < 1:2946787/91‑1 (MQ=255) atTTAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAg < 2:2646914/91‑1 (MQ=255) tttAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTGCCAATGATTGGTAGt < 1:319377/91‑1 (MQ=38) tttAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTGCCAATGATTGGTAGt < 1:208644/91‑1 (MQ=38) tttAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGt > 1:97814/1‑91 (MQ=255) tttAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGt < 2:2225663/91‑1 (MQ=255) tttAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGt > 1:1923545/1‑91 (MQ=255) ttAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTGCCAATGATTGGTAGTc < 2:1699542/91‑1 (MQ=38) ttAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTA‑TTTATCCTTACTTCAAAGAAAAAAACGACTGCCAATGATTGGTAGTCg < 2:533994/91‑1 (MQ=37) tAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTGCCAATGATTGGTAGTCg < 2:706665/91‑1 (MQ=38) tAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTGCCAATGATTGGTAGTCg < 1:2362910/91‑1 (MQ=38) tAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTGCCAATGATTGGTAGTCg < 1:2500412/91‑1 (MQ=38) tAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACCTCAAAGAAAAAAACGACTGCCAATGATTGGTAGTCg < 1:675167/91‑1 (MQ=38) aatgACATTCGTAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAATGAAAAAAACGACTGCCGATGATTGGTAGTCG‑t < 2:1301339/88‑1 (MQ=37) aaaGACATTCATAATATCGCTTTATGTTATGTCGCTTCTTATTTTATCCTTGCTTCAAAGAAAAAAACGACTGCCAATGATTGGTAGTCG‑t < 2:344106/91‑1 (MQ=37) aaGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑tt < 2:1479303/91‑1 (MQ=255) aCATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTGCCAATGATTGGTAGTCG‑ttttt < 2:690190/91‑1 (MQ=37) aCATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑ttttt < 2:1898527/91‑1 (MQ=255) cATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑tttttt < 1:701128/91‑1 (MQ=255) ataataTCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTc < 1:2180856/91‑1 (MQ=255) aataTCGCTGTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTg < 1:2969245/91‑1 (MQ=255) atatCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTgg > 1:2518071/1‑91 (MQ=255) tatCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGa < 2:858394/91‑1 (MQ=255) tCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGAtt > 1:845147/1‑91 (MQ=255) cGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGAttt < 1:835093/91‑1 (MQ=255) cGCTTTATGTTATTTCGCTTCTGATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGAttt < 2:2498773/91‑1 (MQ=255) ttATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAAcc > 2:2093248/1‑91 (MQ=255) tGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATg < 1:770942/91‑1 (MQ=255) tGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATg > 2:1358039/1‑91 (MQ=255) gTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGa > 1:2768936/1‑91 (MQ=255) aTTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACa > 2:263169/1‑91 (MQ=255) aTTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACa > 2:2998096/1‑91 (MQ=255) tttCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACaa > 2:3081115/1‑91 (MQ=255) tttCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACaa > 1:1041505/1‑91 (MQ=255) cGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAata > 1:2153713/1‑91 (MQ=255) gCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAatat > 1:2732950/1‑91 (MQ=255) ttcttATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGa > 2:1026622/1‑91 (MQ=255) ttcttATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGa < 1:263817/91‑1 (MQ=255) ttcttATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGa < 2:194997/91‑1 (MQ=255) cttATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAg < 2:977633/91‑1 (MQ=255) cttATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAg > 1:1644283/1‑91 (MQ=255) cttATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAg > 1:2735876/1‑91 (MQ=255) tATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTa > 1:2950858/1‑91 (MQ=255) tttATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAg > 1:1946983/1‑91 (MQ=255) tttATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAg < 1:1520129/91‑1 (MQ=255) ttATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAga > 1:1288832/1‑91 (MQ=255) tagccTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaa < 2:2181826/88‑1 (MQ=255) aTCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaat < 2:735543/91‑1 (MQ=255) cTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaatgaa < 1:500073/91‑1 (MQ=255) cTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAgaatgaa < 2:841936/91‑1 (MQ=255) aCTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAg < 2:3034125/91‑1 (MQ=255) cTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGt < 2:1283880/91‑1 (MQ=255) tCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTAc < 2:1568752/91‑1 (MQ=255) cAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTAcc < 1:1086936/91‑1 (MQ=255) aaaGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCa < 1:2192209/91‑1 (MQ=255) aaaGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCa < 1:3036295/91‑1 (MQ=255) aGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCAtt > 2:902639/1‑91 (MQ=255) aaaaaCGACTGCCAATGATTGGTAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAata > 1:2542540/1‑91 (MQ=37) aaaaCGACTGCCAATGATTGGTAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatac > 1:1736631/1‑91 (MQ=37) aaaaCGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatac < 2:2473989/91‑1 (MQ=255) aaaaCGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatac < 2:2620059/91‑1 (MQ=255) aaaCGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAataca > 1:2024510/1‑91 (MQ=255) aaCGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatacat > 1:2674215/1‑91 (MQ=255) aaCGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatacat < 1:576361/91‑1 (MQ=255) aaCGACTACCAAGCATTGGCAGTCG‑TTGTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatacat < 2:1187446/91‑1 (MQ=255) cGACTGCCAATGATTGGTAGTCGTTTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatacata > 1:2286476/1‑91 (MQ=37) cGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatacatac < 1:439684/91‑1 (MQ=255) cGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatacatac > 2:2159952/1‑91 (MQ=255) cGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAatacatac < 1:2866838/91‑1 (MQ=255) gACTACCAATCATTGGGAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAAtacataca < 2:2964405/91‑1 (MQ=255) gACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAAtacataca < 1:2039383/91‑1 (MQ=255) gACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAAtacataca > 2:472619/1‑91 (MQ=255) actgccAATGATTGGTAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATacatacat > 1:1988989/5‑91 (MQ=38) aCTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATacatacat > 2:2322676/1‑91 (MQ=255) ctgccAATGATTGGTAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACAtt > 1:2652781/4‑91 (MQ=255) ctgccAATGATTGGTAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACAtt > 1:1007519/4‑91 (MQ=255) ctgccAATGATTGGTAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACAtt > 1:2929128/4‑91 (MQ=39) tgccAATGATTGGTAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTa > 1:2718062/3‑91 (MQ=39) tACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTa < 1:327511/91‑1 (MQ=255) gccAATGATTGGTAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTAt > 1:156562/2‑91 (MQ=255) gccAATGATTGGTAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTAt > 1:1390130/2‑91 (MQ=255) gccAATGATTGGTAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACAAACATTAt > 2:2749453/2‑91 (MQ=39) aCCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTAt > 2:197201/1‑91 (MQ=255) ccAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACTTTATc > 2:2853186/1‑91 (MQ=255) ccAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATc > 2:2466847/1‑91 (MQ=255) aatgaTTGGTAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCgg > 1:1164779/5‑91 (MQ=255) aatgaTTGGTAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCgg > 1:1200348/5‑91 (MQ=255) atgaTTGGTAGTCG‑TTTTTTGTGTCTGGATTCAACCATGAATAAATATGAAGTACAGAATGAATAGTGCCATTAATACAGACATTATCGGa > 2:2361136/4‑91 (MQ=255) aTCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGa < 1:923/91‑1 (MQ=255) aTCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGa < 2:2407140/91‑1 (MQ=255) aTCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGa < 2:2055084/91‑1 (MQ=255) cATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATg < 2:1655151/91‑1 (MQ=255) tGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTAc > 1:1479972/1‑91 (MQ=255) tGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTAc < 2:1087962/91‑1 (MQ=255) ggCAGTCG‑TTTTTTGTGTCTGGCTTTAACCATGAACAAATATGAAGTCCAGAATGAATAGTACCCTTAATACATACATTATCGGATGtccc > 1:867705/1‑88 (MQ=255) ggCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTAct > 1:2234365/1‑91 (MQ=255) ggCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTAct > 2:1796663/1‑91 (MQ=255) cAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTActtc < 2:112754/91‑1 (MQ=255) cAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTActtc > 2:552111/1‑91 (MQ=255) | ATATTTAAAGACATTCATAATATCGCTTTATGTTATTTCGCTTCTTATTTTATCCTTACTTCAAAGAAAAAAACGACTACCAATCATTGGCAGTCG‑TTTTTTGTGTCTGGATTTAACCATGAACAAATATGAAGTACAGAATGAATAGTACCATTAATACATACATTATCGGATGTACTTC > USA300TCH1516_ALE/2372329‑2372509 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |