Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | USA300TCH1516_ALE | 1,605,275 | G→T | R199L (CGT→CTT) | Int‑Tn_2 → | Transposase from transposon Tn916 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 1,605,275 | 0 | G | T | 97.1% | 94.8 / NA | 34 | R199L (CGT→CTT) | Int‑Tn_2 | Transposase from transposon Tn916 |
Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (18/15); minor base A (1/0); total (19/15) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTACAATTATCCAAATGAATATTTGTTAACTAATGTCAAAATTCCTAAAAGAAGAAAAACAATAGAGGATATCGAAAAAGATGAATCTAAAATGTACAACTATTTAGAAATGAACCAAGTCCTACAGATACGTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTGGTATGCGCATAGGAGAACTACAAGCACTGCAGGAAAAAGATATAGA > USA300TCH1516_ALE/1605144‑1605404 | ttACAATTATCCAAATGAATATTTGTTAACTAATGTCAAAATTCCTAAAAGAAGAAAAACAATAGAGGATATCGAAAAAGATGAATCTAAAATGTACAACTATTTAGAAATGAACCAAGTCCTACAGATACTTGa > 2:493308/1‑135 (MQ=255) atatTTGTTAACTAATGTCAAAATTCATAAAACAAAAAAAACAATAGAGGATATCGAAAAAGATGAATCTAAAATGTACAACTATTTAGAAATGAACCAAGTCCTACAGATACTTGATCATATACTAAATGataa > 1:216309/1‑135 (MQ=255) atatTTGTCAACTAATGTCAAAATTCCTAAAAGAAGAAACACAATCGAGGATATAGAAAAAGATGAATCTAAAATGTACAACTATTTAGAAATGAACCAAGTCCTACAGATACTTGATCATATACTAAATGataa > 2:83377/1‑135 (MQ=255) aagtAATATCAAAATTCCTAAAAGAAGAAAAACAATAGAGGATATCGAAAAAGATGAATCTAAAATGTACAACTATTTAGAAATGAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTaca < 1:261128/132‑1 (MQ=255) aaaaTTCCTAAAAGAAGAAAAACAATAAAGGATAACGAAAAAGATGAATCTAAAATGTACAACTATTTAGAAATGAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTAAACAAGCGAAAt > 1:25178/1‑135 (MQ=255) aaTTCCTAAAAGAAGAAAAACAATAGAGGATATCGAAAAAGATGAATCTAAAATGTACAACTATTTAGAAATGAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCg > 2:332878/1‑135 (MQ=255) agaagaAAAACAATAGAGGATATCGAAAAAGATGAATCTAAAATGTACAACTATTTAGAAATGAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAAtt > 2:225599/1‑135 (MQ=255) agaagaAAAACAATAGAGGATATCGAAAAAGATGAATCTAAAATGTACAACTATTTAGAAATGAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAAtt > 2:578265/1‑135 (MQ=255) aaaaaCAATAGAGGATATCGAAAAAGATGAATCTAAAATGTACAACTATTTAGAAATGAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAg > 2:357342/1‑135 (MQ=255) aaCAAAAGAGAATATCGAAAAAGATGAATCTAAAATGTACAACTATTTAGAAATGAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCAt < 2:600560/135‑1 (MQ=255) aCAATAGAGGATATCGAAAAAGATGAATCTAAAATGTACAACTATTTAGAAATGAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATc > 2:671887/1‑135 (MQ=255) atatCGAAAAAGATGAATCTAAAATGTACAACAAATAAAAAATGAACCAAGTACTCCAGATACATGATCATATACTCAAAGATAAAAAGTTACACAAACGAAATCGCATTTTAATTGCCAGCATCTTAGAAATaa > 1:265132/1‑134 (MQ=255) aaGATGAATCTAAAATGTACAACTATTTAGAAATGAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTaa < 2:40193/135‑1 (MQ=255) aTGACTCTAAAATTTAAAACTATTTAGAATTGAACTCAGTACTAAAGATAATTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTg < 1:249513/135‑1 (MQ=255) aTGAATCTAAAATGTACAACTATTTAGAAATGAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCGTCTTAGAAGTACAGGCTTTAACTg < 2:80053/135‑1 (MQ=255) tGAATCTAAAATGTACAACTATTTAGAAATGAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTgg > 2:269930/1‑135 (MQ=255) ttgAAATTAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTGGTATGCGCATAGGAGAACTACAAg < 1:606015/133‑1 (MQ=255) aaTGAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTATAGGTTTTAACTGGTATGTGCATAGGAGAACTACAAGCACt < 1:115803/135‑1 (MQ=255) aaTGAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTGGTATGCGCATAGGAGAACTACAAGCACt < 1:493308/135‑1 (MQ=255) aaTGAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTGGTATGCGCATAGGAGAACTACAAGCACt < 1:671887/135‑1 (MQ=255) aaTGAACCAAGTCCTACAGATACTTCATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTGGTATGCGCATAGGAGAACTACAAGCACt < 1:351761/135‑1 (MQ=255) tGAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAATTGGTATGCGCATAGGAGAACTACAAGCACTGc < 1:40519/135‑1 (MQ=255) tGAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTGGTATGCGCATAGGAGAACTACAAGCACTGc > 2:250454/1‑135 (MQ=255) gccccAAGTCCTACATATACTTAATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTGGTATGCGCATAGGAGAACTACAAGCACTGCa > 1:9738/4‑135 (MQ=255) gAACCAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAACGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTCCAGGCTTTACCTGGTATCCGCATAGGAGACCTCCAGGCACTGcg > 2:448156/1‑134 (MQ=255) cAAGTCCTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTCCAGGCTTTAACTGGTATGCGCATAGGAGAACTACAAGCACTGCAGGaa > 2:35085/1‑135 (MQ=255) cTACAGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAAGCGCATTTTAATTGCCAGCATCTTAAAAGTACAGGCTTTAACTGGTATGCGCATAGGAGAACTACAAGGACTGCAGGAAAAAGat > 2:102336/1‑135 (MQ=255) cAGATACTTGATCATGTACTAAATGATAATAAGTTACACGAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTGGTATGCGCATAGGAGAACCACAAGCACTGTAGGAAAAAGAtata > 1:349413/1‑135 (MQ=255) aGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTGGTATGCGCCTAGGAGCACCACAAGCACTGCAGGCAACAgcgatcg > 2:372685/1‑129 (MQ=255) aGATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTGGTATGCGCATAGGAGAACTACAAGCACTGCAGGAAAAAGATATAg > 2:602754/1‑135 (MQ=255) gATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCTCATTTTACTTGCCAGCATCTTAGAACTACAGGCTTTAACTGGTATGCGCATTGGAGAACTTCAAGCATTTCATGAAAAAGATATAgc < 1:461968/135‑2 (MQ=255) gATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTGGTATGCGCATAGGATAACTACAAGCATTGCAGGAAAAAGATATAGa < 1:324731/135‑1 (MQ=255) gATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTGGTATGCGCATAGGAGAACTACAAGCACTGCAGGAAAAAGATATAGa < 1:225599/135‑1 (MQ=255) gATACTTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTGGTATGCGCATAGGAGAACTACAAGCACTGCAGGAAAAAGATATAGa < 1:578265/135‑1 (MQ=255) | TTACAATTATCCAAATGAATATTTGTTAACTAATGTCAAAATTCCTAAAAGAAGAAAAACAATAGAGGATATCGAAAAAGATGAATCTAAAATGTACAACTATTTAGAAATGAACCAAGTCCTACAGATACGTGATCATATACTAAATGATAATAAGTTACACAAGCGAAATCGCATTTTAATTGCCAGCATCTTAGAAGTACAGGCTTTAACTGGTATGCGCATAGGAGAACTACAAGCACTGCAGGAAAAAGATATAGA > USA300TCH1516_ALE/1605144‑1605404 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |