| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,679,847 | G→A | G111S (GGT→AGT) | ssaA2_4 → | Staphylococcal secretory antigen ssaA2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,679,847 | 0 | G | A | 98.6% | 212.3 / NA | 70 | G111S (GGT→AGT) | ssaA2_4 | Staphylococcal secretory antigen ssaA2 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (31/38); minor base C (0/1); total (31/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAA > USA300TCH1516_ALE/2679718‑2679977 | aaaaaTTGGTATTACAATGAACGAAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACagtagt > 1:491221/1‑135 (MQ=255) aaaaTTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCTACAACCTATATACAAGTCGCAGTTGTTGAACAAGTATATAAAAACAgtagta > 1:123540/1‑135 (MQ=255) aaaaTGTGTATCACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAgtagta < 2:625077/135‑1 (MQ=255) aaaaATGGTATTACAATGCACGTAAATCAAAATATTCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAgtagta < 2:622851/135‑1 (MQ=255) ttGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAAAAGTAGTATTaa > 1:227389/1‑135 (MQ=255) tGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATa < 1:636866/135‑1 (MQ=255) gCACGTAAATCAAAATATGCGACTGGTCGTACTCCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATAc < 1:407663/135‑1 (MQ=255) gCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATAc < 2:190195/135‑1 (MQ=255) aCGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACaa > 2:552834/1‑135 (MQ=255) aCGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTGGAACAAGTATATAAAAACAGTAGTATTAAAGTTGCAAAATACaa > 2:542127/1‑135 (MQ=255) aCGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTACGGACATGTCCCAGTTGTTGAACAAGTAAAAAAAAACAGAAGTCTTAAGGTTTCAGCATACaa > 2:39706/1‑135 (MQ=255) cGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCCTGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTAAGAATACAAc > 1:400032/1‑135 (MQ=255) cGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGAATACAAAAACAGTAGTATTAAAGTTTCAGAATACAAc > 2:534798/1‑135 (MQ=255) gTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACt > 1:454929/1‑135 (MQ=255) aaaTCAAAATCTGCGACTGTTCATACACCAAAAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAAAttt < 1:163131/135‑1 (MQ=255) tgaaaaTATGCTACAGCTCGTACAGTAAGAAAATTCGCGGTCATGCAATCA‑ACTGCAGGATATTACGGACCTGTCGCAGTTGTTCAATAAGTATATTAAAACCGTAGTTTTAAATTTTCAGAATACAACTTTTAt < 2:527867/133‑1 (MQ=255) tCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTAt > 1:619383/1‑135 (MQ=255) tCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTAt < 2:192070/135‑1 (MQ=255) tCAAAAGATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTAt < 2:527591/135‑1 (MQ=255) cAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGACCAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATc < 1:394983/135‑1 (MQ=255) cAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATG‑ACTAACACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATc < 2:636349/135‑1 (MQ=255) cAAAAGATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATc < 2:166511/135‑1 (MQ=255) aaaaATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTCTTAAAGTTTCAAAATACAACCTTTAtacc > 2:533046/1‑132 (MQ=255) atatGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAAACA‑AATGCAGGATATTATGGACATGTAGCAATTGTTGAACAATCATATAAAAACAATAGTATTAAAGTTTCAGAATACAACTTTTATCGccc > 2:383727/1‑135 (MQ=255) atatGCGACTGGTCGTACAACAAGAAAATTAGCTGTAATACAAACA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAATATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCTccc > 1:185867/1‑135 (MQ=255) atGCGACTGGTGGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCAt > 1:289116/1‑135 (MQ=255) ggTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCTCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACCACTTTTATCGCCCATTAAaatac < 1:374842/135‑1 (MQ=255) gTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAaatacaata < 2:427918/135‑1 (MQ=255) acacCAAGAAAACTCTCTGTCATGCAATCA‑ACTGCAGGATAATATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACATTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAatacaataca < 1:175919/135‑1 (MQ=255) acCAATAAAACTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACg < 2:169214/135‑1 (MQ=255) acCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTACAATACAATACACg > 1:526996/1‑135 (MQ=255) acCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACg > 1:483803/1‑135 (MQ=255) ccAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACgt < 2:6663/135‑1 (MQ=255) ccAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACgt > 1:373555/1‑135 (MQ=255) ccAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGGATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATAAACgt > 2:536680/1‑135 (MQ=255) ccAAGAAAATTTGCTGTCATACAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACgt > 1:292755/1‑135 (MQ=255) aggacaTTGGCTGCAATGCAATTA‑TGTGCAGGATATTGTGGACATGTCGCTGTTGTTGAACAAGTATATAAAAACAGTAGTATTTAAGTTTCAGAATACAACTTTCATCGCCCATTAAAATACAATTCGCGTGTa < 2:74511/130‑1 (MQ=255) aGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTa < 2:639777/135‑1 (MQ=255) aaaTTTGCTGTCATGCAATCA‑ACTGCAGAATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTa > 1:581347/1‑135 (MQ=255) tttGCTGTCATGCAATCA‑ACTACAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTCGTATTAAAGTTTCAGAATACAACTTTTATGGCCAATTAAAATACAATAAACGTGTACTaacc > 1:136617/1‑133 (MQ=255) ttggCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATTGTCCATTAATATATTATACTCGTGTAATAAGc < 1:8420/132‑1 (MQ=255) attGCTGTCATGATTACA‑ACTTCAGGCTATTATGGTCATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAGAGTTTCATAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGc > 1:462197/2‑135 (MQ=255) ttGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAGACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCa < 1:534798/135‑1 (MQ=255) ttGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCa < 1:382243/135‑1 (MQ=255) ttGTCACGTAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATATCCGTGCAGTAAGCaaaa < 1:624504/134‑1 (MQ=255) cTGTCCTGCAATCA‑ACTGCAGGATATTATGGACATGTAGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCGTTAAAATACAATACACGTGTACTAAGAaaaa > 1:7602/1‑135 (MQ=255) tCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAgg > 1:675110/1‑135 (MQ=255) tGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACTCGTGTACTAAGCAAAAAGgcag < 1:553999/135‑1 (MQ=255) gtaaTCA‑ACGGCATCATATGAGGGAAATGTCGCAGTTGTGGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGgcagc < 2:123540/133‑1 (MQ=255) gCAATCA‑ACTGCAGGATATTATGGACATGTCCCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTATTAAGCAAAAAGgcagc < 1:291382/135‑1 (MQ=255) cAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGgtagca < 2:373374/135‑1 (MQ=255) cA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTa < 2:573027/135‑1 (MQ=255) ggtaGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACtt < 2:137284/132‑1 (MQ=255) aGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTaa > 2:511580/1‑135 (MQ=255) aGGATATTATGGACATGTCGAAAATAAATAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTaa > 1:668597/1‑135 (MQ=255) ggATATTATGGAACTGTCGCAGTTGTTGAACAAGCAGATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTATGTAAAATGGTAGCACGTAACTTTAAc < 1:291364/135‑1 (MQ=255) ggtattatGGTCTTGTCGCAGTTGTTGTACAACTATATAGAACCAGTAGTATTATAGTTTCAGGATACAACTTTTATTGGCTGTTATAATTCTTTGCACGAATACAAAGCAAAAAGGCAGCACGTAACTTTAACt < 2:270351/133‑1 (MQ=255) atatTATGGACATGTCACAGTTATAGAACAAGTATATAAAAACAGTAGTATTAAAATTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAACGGCAGCACGTAACTTTAAcga > 1:48606/1‑133 (MQ=255) tattatGTACATGTCGCAGTTGTTTAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACtat < 2:377890/135‑1 (MQ=255) gTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCCTTAAAATACAATACACGTGTACTAAGAAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCa > 2:293200/1‑135 (MQ=255) gTCGCAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTACTCa > 2:46868/1‑135 (MQ=255) gTCGCAGTTGTTGAACAAGAATATAAAAACAGTAGTATTAAAGTTTCAGAATAAAACTTTTATAGACAATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCa > 1:300817/1‑135 (MQ=255) cgctcAGTTGTTGAACAAGTATATAAAAACAGTACTATTAAAGTTTCATAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCACCACGTAACTTTAACTATATTTACTAATCa < 2:468416/131‑1 (MQ=255) cAGTTGTTGAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAATTTTAACTATATTTCCTAATCaaaaa < 1:282760/135‑1 (MQ=255) gttgttGAACAAGTATATAAAAACAGTAGTCTTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCCAAAAGGCAGCACGTCACTTTACCTATATTTACTAATAAaacaac > 2:72203/1‑135 (MQ=255) tgttgAACAAGTATATAAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACtt > 1:383689/1‑135 (MQ=255) tatataAAAACAGTAGTATTAATGTTTCAGCATACAACTTTTATTGCCCATTAAAATACAATACACGTGTACTAAGCAATCAGGCAGCACGTAACTTTAACTATATTTTCTATTCTAAACACTTCTATCACGAAc < 2:38326/135‑1 (MQ=255) tatagaAAAACAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAAc < 2:44985/135‑1 (MQ=255) aaaCAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATTAAAAATCTTTTATCACGAACGCTTCaa < 1:551202/135‑1 (MQ=255) aaaCAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCaa < 1:560616/135‑1 (MQ=255) aaaCAGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCaa < 2:454929/135‑1 (MQ=255) | AAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCA‑ACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAA > USA300TCH1516_ALE/2679718‑2679977 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |