| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,789,619 | T→A | 9.4% | intergenic (‑100/+70) | gapA2 ← / ← coaE | Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,789,619 | 0 | T | A | 9.4% | 193.0 / 2.4 | 68 | intergenic (‑100/+70) | gapA2/coaE | Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase |
| Reads supporting (aligned to +/- strand): ref base T (30/31); new base A (2/5); total (32/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.34e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCTACCCATACCATTAATTGCAATATTCGTTGACATTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTT > USA300TCH1516_ALE/1789484‑1789759 | tggaCCCATACCATTAATTGCAATATTCGTTGACATTAATAGCACCCCTTGATCTTTATGTGTTATACTTTATTGAATTAGTATAGCATATTATATGAAATTTGAAATCGTTTTCCGTTGATTTATTTATCTTTTTTATaa < 2:656411/138‑1 (MQ=255)tCTACCCATACCATTAATTGCAATATTCGTTGTCATTAAAAGCTCCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATaa < 2:216743/141‑1 (MQ=255) cTACCCATACCATTAATTGCAATATTCGTTGACATTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTAGTTATCTTTTTTATaaa > 1:98410/1‑141 (MQ=255) aCCCATACCATTAATTGCAATATTCGTTGACATTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATaaaaa > 1:614234/1‑141 (MQ=255) cccATACCATTAATTGCAATATTCGTTGACATTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATaaaaaa < 1:446375/141‑1 (MQ=255) cccATACCATTAATTGCAATATTCGTTGACATTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATaaaaaa < 1:407387/141‑1 (MQ=255) cATACCATTAATTGCAATATTCGTTGACATTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATa > 2:523565/1‑141 (MQ=255) ctACCATTAATTGCAATATTCGTTGACATTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAg < 2:120610/140‑1 (MQ=255) aTACCATTAATTGCAATATTCGTTGACATTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAg < 1:209074/141‑1 (MQ=255) aTTAATTGCAATATTCGTTGACATTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAtt < 1:656420/141‑1 (MQ=255) taaTATTCGTTGACATTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTtacat < 2:655844/140‑1 (MQ=255) cAATATTCGTTGACATTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTCTCTTTTTTATAAAAAATAGTCATTACTtacat < 1:767741/141‑1 (MQ=255) aaTATTCGTTGACATTACAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAAGTAGTATAGCATATTATATGAAATTTGAAAGAGTTTTCCGTTGATTTGTTTATCTTTTTTATACAAAATAGTCATTCCTtacata > 1:76243/1‑141 (MQ=255) cGTTGACATTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTCCTTCCATACATCaa > 2:62483/1‑141 (MQ=255) cGTTGACATTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCaa < 1:691214/141‑1 (MQ=255) cGTTGACATTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCaa < 1:691215/141‑1 (MQ=255) gACATTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAAcgcg < 1:451700/141‑1 (MQ=255) aTTAAAAGCCCCCCTTGATCTTTATGTGTTATACTTTATGTAATTAGTATAGCATATTATATGAAATTTGAAAGCTTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGcgtac < 1:440172/141‑1 (MQ=255) aTTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGcgtac < 1:766077/141‑1 (MQ=255) tAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCTTTACTTACATACATCAACGcgtacgt < 2:481732/141‑1 (MQ=255) aaagGCACCCCTTGATCTTGATGTGTCATAGTGAATGAGATGAGTAGAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTAAAAAAAAAAAAAAAAATAGTCATTACTTACATACATCAACGcgtacgta < 2:617204/141‑1 (MQ=255) aaaaGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTCGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTAAATACATAAAagcgaatata > 1:264744/1‑135 (MQ=255) aaaaGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGcgtacgta > 1:718844/1‑141 (MQ=255) aaaGCACCCCTTGATATTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATCCATCACCGCGTACGTaa > 2:4671/1‑141 (MQ=255) aaaCCACCCCTTGATTTTTATGGGTTATACGGTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTAAAAAAAAAAAAAAAAATAGTCATTACTTACATACATCAACGCGTACGTaa < 2:285974/141‑1 (MQ=255) aGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAg > 2:237965/1‑141 (MQ=255) aGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAg > 2:605271/1‑141 (MQ=255) gCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGt > 2:663100/1‑141 (MQ=255) aCCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTAATTACTTACATACATCAACGCGTACTTAAAGTaa > 2:420026/1‑141 (MQ=255) ccccTTGGTCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAAt < 2:587183/141‑1 (MQ=255) ccccTTCATCTTTATGTGTTATACTTTATGGTATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAAt < 2:386275/141‑1 (MQ=255) cccTTTATCTTTTTGTTTTATACTTTATGGAATTAGTATAGAATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATg < 1:291219/141‑1 (MQ=255) cccTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTTCGTAAAGTAATg > 2:117696/1‑141 (MQ=255) cccTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATg < 2:76217/141‑1 (MQ=255) cccTTGAGCTTTATGTGTTATTGTTAATGGAATTAGTATAGAATATTATATTAAAATTGAAAGCGTTTTCCGTTGATTTATTTAAAAAATAAATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATg < 2:108210/141‑1 (MQ=255) ccattGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATGCATTTATCATTTTTTTAAAAAATAGTCATTACTTACATACCTCCACGCGTACGTAAAGTAATg < 2:638949/138‑1 (MQ=255) ccTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGa > 1:75990/1‑141 (MQ=255) ttgagttttACGGGTTATTCTTTATGGAATGAAGATAGTATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTGTTTATAAAAAAGAGTCATTACTTACATACCTCAACGCGTACGTAAAGTAATGACt < 2:479036/135‑1 (MQ=255) cttgtCTTTATGTGTAATACTTTATGTAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACt < 2:361861/137‑1 (MQ=255) ttttATGTGTTAGACTTTATGGAATTAGTATAGTATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTAGGTAAAGTAATGACttattt < 2:433736/140‑1 (MQ=255) tATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTtata < 1:379316/141‑1 (MQ=255) tgtgTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTTTTTATAgt > 2:524829/1‑141 (MQ=255) ataCTTTATGGAATTAGTATAGTATACTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTAAAATAAAAAAAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAata < 2:137642/141‑1 (MQ=255) cTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAatatat > 2:379345/1‑139 (MQ=255) tttATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTaa > 2:482804/1‑141 (MQ=255) aTGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtct > 2:376312/1‑141 (MQ=255) taGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATGGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTCTTTATAGTGTAATATTAATCTTCATCTCAGtga > 1:146295/1‑139 (MQ=255) taGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTaa > 2:43433/1‑141 (MQ=255) aGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATCGTGTAATATTAATCTTTTTCTCAGTAAt > 1:702207/1‑141 (MQ=255) aGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAAt < 1:215216/141‑1 (MQ=255) aGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTATATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAAt > 1:671190/1‑141 (MQ=255) attatATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGc < 1:550451/141‑1 (MQ=255) atatGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTTTTTTTTTTTTTCATTACTTACATACATCAACGCTTACGTAAAGTAATGACTTATTTATAGTGTAATTTTAATCTTCTTATCCTTATTTCGTCttt > 2:741992/1‑141 (MQ=255) atatGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCttt > 1:123256/1‑141 (MQ=255) atGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTc > 1:284374/1‑141 (MQ=255) tGAAAGCGTTTTCCGTTGATTTATTTAACTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAAc < 1:175568/141‑1 (MQ=255) aaaGCGTTTTCCGTTGCTTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACct > 1:365544/1‑141 (MQ=255) aaaGCGTTTTCCGTTGATTTATTTATCTTTTTTTTTTTTTATTGTCATTACTTACATACATCGACGCGTACGTAAAGTAATGACTTATTTATAGTGTATTATTAAACATCTTCTCCGTAATTCGGCTTTTCAATATATCct > 2:432984/1‑141 (MQ=255) aaaGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACct > 2:519485/1‑141 (MQ=255) aaaGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTAGGCTTTTCAATATAACct > 2:519590/1‑141 (MQ=255) gTTTTCCGTTGATTTATTTATCTTTTATATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACcttcttc < 2:671190/141‑1 (MQ=255) ttttCCGTTGATTTATTTATCGTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACcttcttct < 1:117696/141‑1 (MQ=255) ttGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACa < 1:666210/141‑1 (MQ=255) tatttatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTCATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtcttt > 2:619969/1‑139 (MQ=255) tttatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCa < 2:75990/141‑1 (MQ=255) ttatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATCGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATTTAACCTTCTTGTTCTAACAATCTCTCac > 2:749306/1‑140 (MQ=255) ttatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCaa < 1:4671/141‑1 (MQ=255) atCTTTTATATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTTACAATCTCTCAAgg > 1:482202/1‑141 (MQ=255) ttATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgtt < 1:339163/141‑1 (MQ=255) ttATAAAAAACACTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCTGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgtt < 1:360422/141‑1 (MQ=255) | TCTACCCATACCATTAATTGCAATATTCGTTGACATTAAAAGCACCCCTTGATCTTTATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTT > USA300TCH1516_ALE/1789484‑1789759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |