New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 516939	NA (NA)	8 (0.060)	7/282	7.9	NA	intergenic (+5007/‑1756)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase
	?	USA300TCH1516_ALE	= 516944	NA (NA)					intergenic (+5012/‑1751)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase
Rejected: Coverage evenness skew score above cutoff.

GAAAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/516787‑516939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccacGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGCTCCA  <  USA300TCH1516_ALE/516944‑516798                                                                                                                                                                                                                                                                                                              GAAAGGCCCCGTGGATCTTTACCGGAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGACCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGC                                                                                                                                                          <  2:107378/148‑1 GAAAGCCCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGC                                                                                                                                                          <  2:212595/148‑1 GAAAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATCGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGC                                                                                                                                                          >  2:605515/1‑148 GAAAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTCGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGC                                                                                                                                                          >  1:1061784/1‑148 GAAAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTCGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGC                                                                                                                                                          <  1:1229669/148‑1 GAAAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTCCGCGGAGGAGATGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGC                                                                                                                                                          >  2:145799/1‑148 GAAAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGCGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGC                                                                                                                                                          >  1:364843/1‑148 GAAAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTTGCTGTGTTGGCTTTCTAACCCGC                                                                                                                                                          <  1:1047588/148‑1 GAAAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGC                                                                                                                                                          >  2:878593/1‑148 GAAAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGC                                                                                                                                                          <  1:388560/148‑1 GAAAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGC                                                                                                                                                          <  1:903547/148‑1 GAAAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGC                                                                                                                                                          <  1:1135268/148‑1 GAAAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGAGCTGGTGGGGTACTACCCTAGCTGTGTTGGCTTTCTAACCCGC                                                                                                                                                          >  2:1336546/1‑148 GAAAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGCGTTCGCTGGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGC                                                                                                                                                          >  1:326683/1‑148  AAAGACCCCGTGGAGGTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCA                                                                                                                                                         <  1:310810/148‑1  AAAGACCCCGTGGAGCTTTACTGTGGCCTGATATTGAAATTCGGCACAGTTTGTACAGGATAGGTATGAGCTTTTTACCCGTGAGCGCGAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCA                                                                                                                                                         <  2:153928/148‑1  AAAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCA                                                                                                                                                         <  2:678144/148‑1  AAAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCA                                                                                                                                                         >  2:418192/1‑148   AAGCCCCCGTGGAGCTTTACTGTAGCCTGATAGTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCAC                                                                                                                                                        <  1:585024/148‑1   AAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCAC                                                                                                                                                        <  1:1275592/148‑1   AAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCAC                                                                                                                                                        >  2:104915/1‑148   AAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGATGTGTTGGCTTTCTAACACGCAC                                                                                                                                                        >  2:367515/1‑148   AAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTCAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCAC                                                                                                                                                        <  1:862432/148‑1    AGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACC                                                                                                                                                       >  1:202952/1‑148    AGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACC                                                                                                                                                       >  1:1191438/1‑148     ggcaCCGCGGAGCCTTACTGTAGCCTGATAGTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAGCGGGAGCGCGAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCGTTCTAACCCGCACCA                                                                                                                                                      <  2:117457/144‑1     ggCCCCGTGGAGCTTTACTGTAGACTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGATTACGTGGAGGCGCTGGTGGGATACTACCCGAGCTGTGTTGGCTTTCTAACCCGCACCA                                                                                                                                                      <  2:783544/146‑1     ggCCCCGTGGAGCTTTACTGGCGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCA                                                                                                                                                      <  1:976694/146‑1     ggCCCCGGGGAGCGTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGTTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCA                                                                                                                                                      <  2:786087/146‑1     gcCCCCGGGGCGCTTGACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCA                                                                                                                                                      <  2:316891/146‑1     GACCCGTTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAACCGTGAGCGCTAGCTTACGTGGCGGCGCTGGTGGGATCCTACCCTAGCTGTGTTGGCTTGCTAAGCCGCACCA                                                                                                                                                      <  2:825076/148‑1     GACCCCGTGGAGCTTTACTGTAGCCTGATATTTAAATTCGGCACAGCTTGTACAGGATAGGCAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCA                                                                                                                                                      <  1:464033/148‑1     GACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCCCCGGTAGAAACAGATGGGGAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCA                                                                                                                                                      <  2:992570/148‑1     GACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATCCTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCA                                                                                                                                                      <  2:1000214/148‑1     GACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCA                                                                                                                                                      <  1:345288/148‑1     GACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCA                                                                                                                                                      <  1:1186947/148‑1     GACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCA                                                                                                                                                      <  2:990681/148‑1     GACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCA                                                                                                                                                      <  2:1191160/148‑1     GACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCA                                                                                                                                                      <  1:401904/148‑1     GACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCA                                                                                                                                                      <  1:875073/148‑1     GACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGAGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCCTTCTAACCCGCACCA                                                                                                                                                      >  2:1050901/1‑148     GACCCCGTGGAGCTTTACTGTAGCCTGATATCGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCA                                                                                                                                                      <  2:1376104/148‑1     GACCCCGGGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCA                                                                                                                                                      <  1:794226/148‑1     GACCCCGGGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCA                                                                                                                                                      <  1:170555/148‑1      tCCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCAC                                                                                                                                                     <  2:545601/147‑1      gaCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGAACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGTTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTTTTGGCTTTCTAACCCGCACCAC                                                                                                                                                     <  2:1116130/146‑1      gCCCCGTGTGGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGGAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCAC                                                                                                                                                     <  1:1191859/147‑1      gCCCCGTGGGGCTTTACTGTCGCGGATTATTTAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAGCGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGAGACTACCCTGGCTGTGTTGGCTTTCTAACCCGCCCCAC                                                                                                                                                     <  2:984290/147‑1      cCCCGGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCAC                                                                                                                                                     <  2:1244583/147‑1      ACCCCGTGGAGCTTTACTGTAGCGTGATATTGAAATTCGGCACAGCTTGTACAGGTTAGGTAGGAGCCTTTGAAACGTGAGCGCTATCTGACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCGCCAC                                                                                                                                                     <  2:984298/148‑1      ACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCAC                                                                                                                                                     <  1:571334/148‑1      ACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCAC                                                                                                                                                     >  1:438475/1‑148      ACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCAC                                                                                                                                                     <  1:18131/148‑1      ACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCAC                                                                                                                                                     <  2:1235085/148‑1      ACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTAGAATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCAC                                                                                                                                                     >  1:730069/1‑148      ACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAACCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCAC                                                                                                                                                     <  1:136912/148‑1      ACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGCATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCAC                                                                                                                                                     >  1:363880/1‑148      ACCCCGTGGAGCTTTACTGTAGCCAGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCAC                                                                                                                                                     >  1:702373/1‑148      ACCCCGGGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTCGGCTTTCTAACCCGCACCAC                                                                                                                                                     <  2:128559/148‑1         CCGTGGAGCTTTACTGTAGCCTGATATTGAAATCCGGCACAGCTTGTACAGGAAAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTGGGCTTTCCAACCAGCACCcctca                                                                                                                                                  >  2:489049/1‑143                 CTTTACTGTAGCCTGATATTTAAATGCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCACGATAAGTGGTG                                                                                                                                          <  1:78976/148‑1                 CTTTACTGGAGCCTGACATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCACGATAAGTGGTG                                                                                                                                          <  1:246014/148‑1                  TTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCACGATAAGTGGTGC                                                                                                                                         >  1:569377/1‑148                  TTTACTGTAGCCTGATATTGAAATTCGCGACAGCTTTGACAGGAGAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCACGATAAGTGGTGC                                                                                                                                         <  1:32902/148‑1                         TAGCCGGATATTGAGATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCACGATAAGTGGTGCGGGTTAG                                                                                                                                  <  2:526106/148‑1                           GCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCACGATAAGTGGTGCGGGTTAGAA                                                                                                                                <  2:569377/148‑1                                                 AGCTTGTACAGGGTAGGGAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTA                                                                                                          <  2:1250400/148‑1                                                   ctcgtcCAGGATAGGTAGGAGCCTTTGGAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCACGATAAGTGGTGCGGGTTAGAAAGGCAACACAGCTAGGGTAGTATC                                                                                                        <  2:1238741/142‑1                                                                                                                                                    CACCACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAG       >  2:443688/1‑148                                                                                                                                                    CACCACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAG       >  2:322498/1‑148                                                                                                                                                    CACCACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTACGACTTTGCCTGTCCAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAG       >  1:1379891/1‑148                                                                                                                                                    CACCACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTACCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAG       >  1:965247/1‑148                                                                                                                                                     ACCGCGATAAGTGGTGCGGGTTAGAAAGCCAACACACCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGC      <  2:145262/148‑1                                                                                                                                                     ACCACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGC      <  1:886803/148‑1                                                                                                                                                     ACCACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGC      <  1:145108/148‑1                                                                                                                                                     ACCACGATAAGTGGGGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGC      <  1:1213489/148‑1                                                                                                                                                     ACCACGATAAGGGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGC      <  1:544291/148‑1                                                                                                                                                      CCACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTGGTATCCCACCAGCGCCTCCACGTAAGTTAGCGCTCACGGTTCAAAGGCTCCTACCTATCCTGGACAAGCTGGGCCGAATTTCAATATCAGGCTACAGTAAAGCT     >  2:1280401/1‑148                                                                                                                                                      CCACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGCT     >  1:151270/1‑148                                                                                                                                                      CCACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGCT     >  2:305480/1‑148                                                                                                                                                      CCACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGCT     >  2:454964/1‑148                                                                                                                                                      CCACGATAAGTGGTGCAGGTTAGAAGGCTAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCCCGTCCGCTAGGGCACACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCGGTGCCGACTTTCAATATCAGGATACAGTAAAGCT     >  2:710284/1‑148                                                                                                                                                       ccCGATAAGCGGTGCGGGTGAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTACCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGCTC    <  2:201469/146‑1                                                                                                                                                       CACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGACTTTCAATATCAGGCTACAGTAAAGCTC    >  2:1413169/1‑148                                                                                                                                                       CACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGCTC    <  1:1403487/148‑1                                                                                                                                                       CACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGCTC    <  1:62925/148‑1                                                                                                                                                       CACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGCTC    <  1:491680/148‑1                                                                                                                                                       CACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGCTC    >  1:767694/1‑148                                                                                                                                                       CACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGCCTCCTACCTATCCTGTACCAGCTGTGTCGCATTTCTATATCAGGCTACAGTAAAGCTC    <  2:1037086/148‑1                                                                                                                                                        ACGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGCTCC   <  1:837562/148‑1                                                                                                                                                         CGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGCTCCA  <  1:231703/148‑1                                                                                                                                                         CGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTAGCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGCTCCA  <  1:468383/148‑1                                                                                                                                                                                                                                                                                                              GAAAGACCCCGTGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGCCTTTGAAACGTGAGCGCTAGCTTACGTGGAGGCGCTGGTGGGATACTACCCTAGCTGTGTTGGCTTTCTAACCCGCACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/516787‑516939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccacGATAAGTGGTGCGGGTTAGAAAGCCAACACAGCTAGGGTAGTATCCCACCAGCGCCTCCACGTAAGCTAGCGCTCACGTTTCAAAGGCTCCTACCTATCCTGTACAAGCTGTGCCGAATTTCAATATCAGGCTACAGTAAAGCTCCA  <  USA300TCH1516_ALE/516944‑516798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.