New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1205323102 (0.780)25 (0.260)
+AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG		 8/218 6.1 21.8% intergenic (‑204/‑365) USA300HOU_RS15290/lspA hypothetical protein/Lipoprotein signal peptidase
?USA300TCH1516_ALE 2478252 = 141 (1.080)intergenic (+139/‑436) USA300HOU_RS12760/USA300HOU_RS12765 hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 141 total aligned reads displayed.

AATAGTTAATCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTT  >  USA300TCH1516_ALE/2478105‑2478396
                                                                                                                                                      |                                                                                                                                                
aataGTTAATCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTACAGAGTCTGGGAC‑ATTAAT‑CCCTaaaaaaa                                                                                                                                                  >  2:489475/1‑148 (MQ=255)
aataGTTAATCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTaaaaaaa                                                                                                                                                  >  2:254106/1‑148 (MQ=255)
aataGTTAATCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTaaaaaaa                                                                                                                                                  >  2:626797/1‑148 (MQ=255)
 ataGTTAATCCACAAACAAACTATTATTATAGGTTGTTTCGAATATTGCGTCAAACTATCCTAAAATATTCGTTAATC‑CTTGATTATACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTaaaaaaaa                                                                                                                                                 <  2:678160/148‑1 (MQ=255)
  taGTTAATCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATGAAT‑CCCTaaaaaaaaa                                                                                                                                                >  2:1096949/1‑147 (MQ=255)
  taGTTAATCCACAAACAAAAAAATATTATAGGTTATCGTGGCTATTTCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTaaacaaaaa                                                                                                                                                >  2:238339/1‑147 (MQ=255)
    gTTAATCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAAcag                                                                                                                                              <  1:1271213/148‑1 (MQ=255)
    gTTAATCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAAcag                                                                                                                                              <  1:1317988/148‑1 (MQ=255)
     ttAATCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAACAAAcagc                                                                                                                                             >  1:195572/1‑148 (MQ=255)
     ttAATCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCAAAAAAAAAcagc                                                                                                                                             >  2:480990/1‑148 (MQ=255)
       aaTCCACAAACAAACTATTATTATAGGTTGTTTCTAATCTTGAGCCCAATTATGTTTACATATTCGGTAATA‑CTCGGCTAGATAACTGTTATCAGGTAGAGAAATAATCTAAAGAGTCTGTGAC‑AGTAAT‑CCCTAAAAAAAAcagcaa                                                                                                                                           >  2:1031693/1‑147 (MQ=255)
       aaTCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTATT‑CCCTAAAAAAAAcagcag                                                                                                                                           >  1:302356/1‑148 (MQ=255)
       aaTCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAAcagcag                                                                                                                                           >  2:536527/1‑148 (MQ=255)
       aaTCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGCAC‑ATTAAT‑CCCTAAAACAAAcagcag                                                                                                                                           >  2:1199289/1‑148 (MQ=255)
        aTCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGt                                                                                                                                          >  1:1223414/1‑148 (MQ=255)
         tCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTa                                                                                                                                         <  1:70764/148‑1 (MQ=255)
             caaacaaaCTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGAt                                                                                                                                     <  1:1292372/148‑1 (MQ=255)
              aaacaaacTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATa                                                                                                                                    <  1:897317/148‑1 (MQ=255)
                acaaacTATTATTATAGGTTGATTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAAt                                                                                                                                  <  2:1215344/148‑1 (MQ=255)
                   aacTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAAtttt                                                                                                                               >  1:1076511/1‑148 (MQ=255)
                      tattattatAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCaa                                                                                                                            <  2:444947/148‑1 (MQ=255)
                         tattatAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGATAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTCAAGAGTCAGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTa                                                                                                                         >  1:1038987/1‑148 (MQ=255)
                          attatAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCACTTAg                                                                                                                        >  2:15653/1‑148 (MQ=255)
                           ttatAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGa                                                                                                                       <  2:33625/148‑1 (MQ=255)
                                ggTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAata                                                                                                                  >  1:1290227/1‑148 (MQ=255)
                                ggTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAata                                                                                                                  >  1:431201/1‑148 (MQ=255)
                                ggTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTAGTTAATC‑ATTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGACTCTGGGAA‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTAAATTCAAAAata                                                                                                                  >  2:533540/1‑148 (MQ=39)
                                ggTTGTTTCTAATATTGCGTCAAACTATATTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACTGCAGTAAGATAATTTTCAATTAGAAAata                                                                                                                  >  1:859666/1‑148 (MQ=255)
                                ggTTGCATCTAAAATTGAGTCAAACTATCTTTAAATATTAGTTAATC‑ATTGGTTAAACAATTGGTCTATTGAAAATGAAAAAACAAAAGAATCTGGGAC‑AGTAAG‑CACTACAAAAAACAGCAATAAGGTAATTTTCAATTACaaaaaa                                                                                                                  >  2:601947/1‑146 (MQ=255)
                                 gttgttTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAatat                                                                                                                 >  2:810973/1‑148 (MQ=255)
                                           atatTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTActgctg                                                                                                       >  1:1108602/1‑148 (MQ=255)
                                            catTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGt                                                                                                      <  1:848988/147‑1 (MQ=255)
                                               tGCGTCAAACTATCTTTAAATAATCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAACAAACAGCAGGAAGATAATTTTCAATTAGAAAATATCTTACCGCTGGtct                                                                                                   >  2:961659/1‑148 (MQ=37)
                                               tGCGTCAAACTATATTTAAATATTCGTTAATC‑CCTGATTGGACAATTCTTATATTGAAAATAAATAAACTAAAGAGTCTGGTAC‑ATTAAT‑CCCTAAAAAAAACACCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTact                                                                                                   <  2:359369/148‑1 (MQ=37)
                                               tGCGTCAAACTAGCTTGAAAGATTCGTAACTG‑CTTGATTAGACAATTGTTATATTGAAAATAAATATACTAAAGGGTCTGGGAT‑AAAAAA‑CAAAAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTtct                                                                                                   <  2:700587/148‑1 (MQ=21)
                                               tGCGGCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTtct                                                                                                   <  2:462161/148‑1 (MQ=255)
                                                gCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTtctc                                                                                                  >  2:1189358/1‑148 (MQ=255)
                                                   tCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTAt                                                                                               >  1:692231/1‑148 (MQ=255)
                                                      aaCTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTta                                                                                            <  1:1353301/148‑1 (MQ=255)
                                                       aCTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTtat                                                                                           >  2:1269942/1‑148 (MQ=255)
                                                                 aaTATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTc                                                                                 >  1:970525/1‑148 (MQ=255)
                                                                 aaTAGTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAA‑CACTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTc                                                                                 <  2:1160826/148‑1 (MQ=255)
                                                                  atatTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCg                                                                                <  2:1222198/148‑1 (MQ=255)
                                                                     ttCGTTAATCGCTTG‑TTAGAACATTGGTATATGAAAAATAAACAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTAt                                                                             <  1:1033226/148‑1 (MQ=18)
                                                                          tAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAAt                                                                        >  2:1336464/1‑148 (MQ=255)
                                                                                       aGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAGTACTTCGTATTGAATGGCTTCGCTATg                                                            <  1:916779/148‑1 (MQ=255)
                                                                                         aCAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTCAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGCCTTCGTTATccc                                                          >  2:536247/1‑148 (MQ=255)
                                                                                         aCAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGcc                                                          >  2:100408/1‑148 (MQ=255)
                                                                                              tGTTATATTGAAAATAAATACACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCt                                                     <  1:803306/148‑1 (MQ=255)
                                                                                                 tataTTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGc                                                  >  1:1301558/1‑148 (MQ=255)
                                                                                                     ttGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACAt                                              >  1:565873/1‑148 (MQ=255)
                                                                                                      tGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGTTTCGCTATGCCCATCTGGCACAtt                                             <  1:839513/148‑1 (MQ=255)
                                                                                                      tGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACAtt                                             <  2:1076511/148‑1 (MQ=255)
                                                                                                      tGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACAtt                                             <  2:837304/148‑1 (MQ=255)
                                                                                                      tGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACAtt                                             >  1:444049/1‑148 (MQ=255)
                                                                                                      tGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACAtt                                             >  1:269712/1‑148 (MQ=255)
                                                                                                      tGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCAACTGGCACAtt                                             >  2:1155921/1‑148 (MQ=255)
                                                                                                       gAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTa                                            <  1:933631/148‑1 (MQ=255)
                                                                                                       gAAAATAAATAAACTAAAGAGCCTGGGAC‑ATTAATCCCCAAAAAAAAACAGCCGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACAtt                                             <  1:539066/148‑1 (MQ=18)
                                                                                                        aaaaTAAATAAACTAAAGCGTCTGGGAC‑AATAAT‑CCCTCAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTAc                                           <  1:637394/148‑1 (MQ=255)
                                                                                                        aaaaTAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTAc                                           >  1:746799/1‑148 (MQ=255)
                                                                                                        aaaaTAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTAc                                           >  2:1212035/1‑148 (MQ=255)
                                                                                                         aaataaatAAACTAAAGATTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCACTTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACt                                          >  2:514600/1‑148 (MQ=255)
                                                                                                         aaataaatAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATTCCCATCTGGCACATTACt                                          >  1:395043/1‑148 (MQ=255)
                                                                                                         aaataaaaAAACTAAAGAGGC‑GGGACTATTAAA‑CCCAAAAAAACACAGCAGTAAGATACTTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACt                                          <  1:572243/148‑1 (MQ=17)
                                                                                                           ataaataaACTAAAGAGTCTGGGAC‑ATTAGT‑CCCTAAAAAAAACAGCAGTAAGCTAATTTTCAATTAGAAAATATCTTACTGCTGTTCTATATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCTTCTGGCACATTACTGt                                        <  2:1038987/148‑1 (MQ=255)
                                                                                                              aataaaCTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTaaa                                     <  1:241481/148‑1 (MQ=255)
                                                                                                              aataaaCTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTaaa                                     >  1:553351/1‑148 (MQ=255)
                                                                                                                taaaCTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAAt                                   <  1:629443/148‑1 (MQ=255)
                                                                                                                taaaCTAAAGAGGCTACGAC‑AGTAAT‑TCCTAAAAAAAACAGCAGTCAGATAATTTTCAATTAGAAAATATCTTACTGCTGTCCTCTATTTATACAAAACTTCGTATTGAATGTCTTCTCTATGCCCATCTGGCACATTACTGTAAAAt                                   <  1:69758/148‑1 (MQ=17)
                                                                                                                 aaaCTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAAtt                                  <  2:859666/148‑1 (MQ=255)
                                                                                                                 aaaCTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAAtt                                  <  2:431201/148‑1 (MQ=255)
                                                                                                                  aaCTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTc                                 >  2:394558/1‑148 (MQ=255)
                                                                                                                   aCTAAAGAGTCTGGGAT‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCt                                <  1:923196/148‑1 (MQ=255)
                                                                                                                   aCTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCt                                <  1:1189358/148‑1 (MQ=255)
                                                                                                                   aCTAAAGAGTCTGGGAC‑ATTAAT‑CAACAAAAACAACCGAAGAACTATCATTTTCAGTTCGAATTTATCTTACTGCTGTTCTCTATTTTTATTAGACTTCTTTTTGAATTGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCt                                <  2:1031854/148‑1 (MQ=9)
                                                                                                                   aCTAAAGAGTCTGGGAC‑ATTAAA‑CCCTAAAAAAAACAACAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCt                                >  1:752631/1‑148 (MQ=255)
                                                                                                                    cTAAATAGTCTGGAAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCta                               <  2:811597/148‑1 (MQ=255)
                                                                                                                     tAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCtat                              >  1:1331270/1‑148 (MQ=255)
                                                                                                                      agacaggcTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCACCTGGCACATTACTGTAAAATTCtata                             >  2:870323/8‑148 (MQ=255)
                                                                                                                      aaaGAGTCTGGTAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATACCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCtata                             <  2:1768/148‑1 (MQ=255)
                                                                                                                      aaaGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCtata                             <  1:51921/148‑1 (MQ=255)
                                                                                                                      aaaGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCtata                             <  1:146589/148‑1 (MQ=255)
                                                                                                                          agTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATa                         >  1:19866/1‑148 (MQ=255)
                                                                                                                             cTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGaa                      >  1:347632/1‑148 (MQ=255)
                                                                                                                                ggAC‑ATTAAT‑CCCTAAAAACACCAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAAttt                   <  1:802869/148‑1 (MQ=255)
                                                                                                                                ggAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAAttt                   <  1:888668/148‑1 (MQ=255)
                                                                                                                                  aC‑ATTAAT‑CCCTAAAAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATGTTAGTTCTGTTCTCTATTTATACAATACTTAGTATTGAATGGCTTCGCTATGCCCATGTGGCAAATTAATGTAAAATTCTATAAATAAACttttt                 >  2:125806/1‑148 (MQ=14)
                                                                                                                                     aTTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTtga               <  1:435104/148‑1 (MQ=255)
                                                                                                                                       tAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTtgatg             >  2:750133/1‑148 (MQ=255)
                                                                                                                                         aT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCGTCGGGCACATTACGGTAAAATTCTATAAATAGAATTTTTGTTGAc           >  1:385927/1‑148 (MQ=255)
                                                                                                                                         aT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGAc           >  1:1122021/1‑148 (MQ=255)
                                                                                                                                         aT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGAc           >  1:1231154/1‑148 (MQ=255)
                                                                                                                                          t‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACg          <  2:1382765/148‑1 (MQ=255)
                                                                                                                                           accttAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACg          <  2:966309/144‑1 (MQ=255)
                                                                                                                                               tAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTc      >  2:726139/1‑148 (MQ=38)
                                                                                                                                               tAAAAAAAACAGCAGTAAGATAACTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTACACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACACTAGTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTc      <  1:305367/148‑1 (MQ=255)
                                                                                                                                                aaaaaaaaCAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTcc     >  1:1264685/1‑148 (MQ=40)
                                                                                                                                                  aaaaaaCAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCt   >  2:656003/1‑148 (MQ=38)
                                                                                                                                                   aaaaaCAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCtt  <  1:1368090/148‑1 (MQ=39)
                                                                                                                                                      |                                                                                                                                                
AATAGTTAATCCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATC‑CTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGAC‑ATTAAT‑CCCTAAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTT  >  USA300TCH1516_ALE/2478105‑2478396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.